We present here the complete genome sequence of a common avian clone of Pasteurella multocida, Pm70. The genome of Pm70 is a single circular chromosome 2,257,487 base pairs in length and contains 2,014 predicted coding regions, 6 ribosomal RNA operons, and 57 tRNAs. Genome-scale evolutionary analyses based on pairwise comparisons of 1,197 orthologous sequences between P. multocida, Haemophilus influenzae, and Escherichia coli suggest that P. multocida and H. influenzae diverged Ϸ270 million years ago and the ␥ subdivision of the proteobacteria radiated about 680 million years ago. Two previously undescribed open reading frames, accounting for Ϸ1% of the genome, encode large proteins with homology to the virulence-associated filamentous hemagglutinin of Bordetella pertussis. Consistent with the critical role of iron in the survival of many microbial pathogens, in silico and wholegenome microarray analyses identified more than 50 Pm70 genes with a potential role in iron acquisition and metabolism. Overall, the complete genomic sequence and preliminary functional analyses provide a foundation for future research into the mechanisms of pathogenesis and host specificity of this important multispecies pathogen.I t has been more than a century since Louis Pasteur conducted experiments with Pasteurella multocida (Pm), first demonstrating that laboratory attenuated bacteria could be used for the development of vaccines (1). Despite this seminal discovery, the molecular mechanisms for infection and virulence of Pm have remained largely undetermined, and this organism has continued to cause a wide range of diseases in animals and humans. It is the causative agent of fowl cholera in domesticated and wild birds, hemorrhagic septicemia in cattle, atrophic rhinitis in swine, and is the most common source of infection in humans because of dog and cat bites (2, 3).Because the genomic DNA sequence encodes all of the heritable information responsible for microbial replication, virulence, host specificity, and ability to evade the immune system, a comprehensive knowledge of a pathogen's genome provides all of the necessary information required for cost-effective and targeted research into disease prevention and treatment. To better understand the molecular basis for Pm's virulence, pathogenicity, and host specificity, we sequenced the genome of a common avian isolate recovered from a recent case of fowl cholera in chickens. The analysis identified a total of 2,014 open reading frames, including several encoding putative virulence factors. In particular, Pm has two genes with significant homology to the filamentous hemagglutinin gene in Bordetella pertussis, as well as more than 50 genes with a potential role in iron uptake and metabolism. The analysis also provides strong evidence that Pm and its close relative, Hemophilus influenzae (Hi), diverged Ϸ270 million years ago (mya) and that the ␥ subdivision of the proteobacteria, a group that contains many of the pathogenic Gram-negative organisms, radiated Ϸ680 mya.
Materials and Meth...