The barA and uvrY genes of Escherichia coli encode a two-component sensor kinase and a response regulator, respectively. Although this system plays a major role in the regulation of central carbon metabolism, motility, and biofilm formation by controlling the expression of the CsrB and CsrC noncoding RNAs, the environmental conditions and the physiological signal(s) to which it responds remain obscure. In this study, we explored the effect of external pH on the activity of BarA/UvrY. Our results indicate that a pH lower than 5.5 provides an environment that does not allow activation of the BarA/UvrY signaling pathway.The BarA (bacterial adaptive response) sensor kinase of Escherichia coli is a member of the subclass of tripartite sensor kinases that contain a primary transmitter domain, a central receiver domain, and a C-terminal phosphotransfer domain (12). BarA is the cognate kinase of UvrY, a response regulator belonging to the FixJ family (14). The designation uvrY is derived from the close linkage on a bicistronic mRNA with the uvrC gene, which encodes a subunit of the UvrABC DNA repair complex. However, mutations in uvrY have no effect on the UV-light-induced DNA repair response (11).The E. coli BarA/UvrY two-component system (TCS) and its homologues in other gram-negative bacteria, such as BarA/ SirA of Salmonella, ExpS/ExpA of Erwinia, VarS/VarA of Vibrio, and GacS/GacA of Pseudomonas species, have been shown to positively control expression of noncoding RNAs, including CsrB and CsrC in E. coli (9,16,23). These small regulatory RNAs together with the 6.8-kDa CsrA protein constitute the Csr (carbon storage regulation) system of E. coli, which has a major impact on regulation of carbon metabolism pathways (16,23). Consequently, deletion of the barA or uvrY gene in E. coli has drastic effects on the ability of the bacteria to successfully grow in competition with the wild-type strain depending on the carbon source in the medium, suggesting that BarA and UvrY are crucial for efficient adaptation to different metabolic pathways (13). Mutations in the Csr system in E. coli and Salmonella enterica also cause other phenotypic effects, including changes in motility, adhesion, and biofilm formation (1,7,18,19,22). Furthermore, the BarA/UvrY TCS and its homologues have a clear link to genes involved in bacterial virulence (1-3, 6, 15, 20).The environmental conditions and the physiological signal(s) to which BarA and its homologue sensor kinases respond have not been identified. It has been suggested that BarA may respond to the sensing of the host organism by the bacteria during an infection (24), as many of the target genes are involved in pathogenesis. Experimental evidence, however, shows that this system is active in the absence of cell attachment and in the absence of any host organism (13,18).External pH can be shifted substantially by bacterial metabolism. For instance, growth on sugars, especially if oxygen becomes limiting, produces organic acids that are excreted and lead to a low pH, whereas growth on am...