Background: Craniosynostosis, the premature fusion of one or more cranial sutures, affects approximately 1 in every 2000-2500 live births. The etiology of sagittal craniosynostosis, the most prevalent form of isolated craniosynostosis, involves interplay between genetic and environmental insults, such as perinatal risk factors. However, the detailed information still remains largely unknown. Methods: The proband, a female monochorionic twin diagnosed with sagittal craniosynostosis, as well as her healthy twin sister and parents, were enrolled in our study. The obstetric medical records were retrospectively reviewed. Genetic cause was investigated by whole exome sequencing (WES) and further confirmed by Sanger sequencing.Results: We identified a novel heterozygous mutation of AXIN2 (c.1181G>A) in monochorionic twins and their father. However, only the proband presented sagittal craniosynostosis. This mutation results in the replacement of Arg at residue 394 by His (p.R394H). Arg 394 is located at the GSK3β binding domain of the AXIN2 protein, which is highly conserved across species. The obstetric medical records revealed that the proband had additional persistent breech presentation and intrauterine growth restriction, except for the perinatal risk factors shared by the twins.Conclusions: Based on the role of AXIN2 in craniosynostosis development and deleterious prediction in silico of AXIN2 (c.1181G>A: p.R394H), we speculate that this particular mutation confers susceptibility to sagittal craniosynostosis, while extra environmental insults are also involved in the pathogenesis of this case. Our findings provide a new evidence for the gene-environment interplay in understanding pathogenesis of craniosynostosis.