2021
DOI: 10.1038/s41467-021-25430-9
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Genetic and epigenetic basis of hepatoblastoma diversity

Abstract: Hepatoblastoma (HB) is the most common pediatric liver malignancy; however, hereditary predisposition and acquired molecular aberrations related to HB clinicopathological diversity are not well understood. Here, we perform an integrative genomic profiling of 163 pediatric liver tumors (154 HBs and nine hepatocellular carcinomas) based on the data acquired from a cohort study (JPLT-2). The total number of somatic mutations is precious low (0.52/Mb on exonic regions) but correlated with age at diagnosis. Telomer… Show more

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Cited by 56 publications
(89 citation statements)
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“…After quality control, we obtained 21,450 single-cell transcriptomes from PT and AT samples of HB. Based on the canonical marker gene expression, 3,085 cells were annotated as tumor cells ( GPC3, EPCAM, AFP, ALB, DLK1 ), while 18,365 cells were designed as non-tumor cells ( Figures 4D, E ) ( 44 , 45 ). We further confirmed the identity of tumor cells by evaluation of inferred segmental chromosomal alterations.…”
Section: Resultsmentioning
confidence: 99%
“…After quality control, we obtained 21,450 single-cell transcriptomes from PT and AT samples of HB. Based on the canonical marker gene expression, 3,085 cells were annotated as tumor cells ( GPC3, EPCAM, AFP, ALB, DLK1 ), while 18,365 cells were designed as non-tumor cells ( Figures 4D, E ) ( 44 , 45 ). We further confirmed the identity of tumor cells by evaluation of inferred segmental chromosomal alterations.…”
Section: Resultsmentioning
confidence: 99%
“…22 Conversely, the genomic landscape of pediatric cHCC is heterogeneous and includes molecular alterations in genes that are frequently mutated in adult HCC, including CTNNB1 and TERT, although TP53 mutations appear to be less common in pediatric versus adult cHCCs. 23,24 Analyzing differences in outcomes between these types of hepatocellular neoplasms is complex, because both resection rates and transplantation rates differ between cell types. Early studies suggested improved (1.43, 61.16) .02…”
Section: Discussionmentioning
confidence: 99%
“…The DNAJB1 ‐ PRKACA fusion changes PKA activity and phosphorylation targets, 21 in addition to subsequent downstream transcriptomic changes 22 . Conversely, the genomic landscape of pediatric cHCC is heterogeneous and includes molecular alterations in genes that are frequently mutated in adult HCC, including CTNNB1 and TERT , although TP53 mutations appear to be less common in pediatric versus adult cHCCs 23,24 …”
Section: Discussionmentioning
confidence: 99%
“…It is well known that beta-catenin mutation is a hallmark of HB, although results from recent whole-exome sequencing analyses have shown that other mutations are rarely seen in HB (Jia et al, 2014;Sumazin et al, 2016;Nagae et al, 2020;Carrillo-Reixach et al, 2021). This paucity of mutations has been reported in many pediatric tumors and may be correlated with their early age of onset (Vogelstein et al, 2013), indicating that epigenetic aberrations may be an important mechanism involved in the pathogenesis of HB.…”
Section: Introductionmentioning
confidence: 99%