Genetic analysis of agronomic traits in a wide cross of chickpea

Cobos, María José; Winter, Peter; Kharrat, Mohamed; Cubero, J. I.; Gil, J.; Millán, Teresa; Rubio, J.

doi:10.1016/j.fcr.2008.11.006

Cited by 110 publications

(98 citation statements)

References 51 publications

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“…Nevertheless, the genetic basis of resistance to races 1B/C and 6 is still unknown. Genetic resistance to Foc races was reviewed by Sharma and Muehlbauer [45], and some genes resistant to races 0, 1, 2, 3, 4 and 5 (foc0 2 , foc-1, foc-2, foc-3, foc-4 and foc-5) are located on LG2 of the chickpea map [45,72,75,76,78,79]. However, one of the two resistance genes for race 0 (foc0 1 ) was found in LG5 [80] (Table 1).…”

Section: Resistance To Fusarium Wiltmentioning

confidence: 99%

“…The greatest number of maps including a large number of markers were achieved using populations derived from crosses with C. reticulatum [78,82,[109][110][111][112]. Nevertheless, mapping populations derived from intraspecific crosses were obtained due to the development of microsatellite markers that detect a greater number of polymorphisms [1,80,108,113,114].…”

Section: Genetic Mapsmentioning

confidence: 99%

“…Since then, many maps have been developed by different research groups. Genes that control different characters such as flower color, double pod, growth habit and Fusarium wilt resistance [45,80,[104][105][106][107] as well as QTLs (Quantitative Traits Loci) associated with flowering time, agronomics traits and ascochyta blight resistance were located on these maps [1,78,108].…”

Section: Genetic Mapsmentioning

confidence: 99%

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Fusarium Wilt Affecting Chickpea Crop

et al. 2017

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Chickpea (Cicer arietinum L.) contributes 18% of the global production of grain legume and serves as an important source of dietary protein. An important decrease in cropping area and production has been recorded during the last two decades. Several biotic and abiotic constraints underlie this decrease. Despite the efforts deployed in breeding and selection of several chickpea varieties with high yield potential that are tolerant to diseases, the situation has remained the same for the last decade. Fusarium wilt caused by Fusarium oxysporum f. sp. ciceris (Foc) is the major soil-borne fungus affecting chickpeas globally. Fusarium wilt epidemics can devastate crops and cause up to 100% loss in highly infested fields and under favorable conditions. To date, eight pathogenic races of Foc (races 0, 1A, 1B/C, 2, 3, 4, 5 and 6) have been reported worldwide. The development of resistant cultivars is the most effective method to manage this disease and to contribute to stabilizing chickpea yields. Development of resistant varieties to fusarium wilt in different breeding programs is mainly based on conventional selection. This method is time-consuming and depends on inoculum load and specific environmental factors that influence disease development. The use of molecular tools offers great potential for chickpea improvement, specifically by identifying molecular markers closely linked to genes/QTLs controlling fusarium wilt.

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Section: Resistance To Fusarium Wiltmentioning

confidence: 99%

Section: Genetic Mapsmentioning

confidence: 99%

Section: Genetic Mapsmentioning

confidence: 99%

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Fusarium Wilt Affecting Chickpea Crop

et al. 2017

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“…Several other intra-specifi c mapping populations have been developed and used to identify the markers associated with traits like resistance to fusarium wilt (Tekeoglu et al 2002 ;Udupa and Baum 2003 ;Sharma et al 2004Sharma et al , 2005, resistance to ascochyta blight (Iruela et al 2007 ;Anbessa et al 2009 ;Kottapalli et al 2009 ), resistance to rust (Madrid et al 2008 ), resistance to botrytis grey mold (Anuradha et al 2011 ), salinity tolerance (Vadez et al 2012 ), drought tolerance (unpublished data with ICRISAT), seed traits (Cobos et al 2009 ) and, for grain yield (Rehman et al 2012 ). Several of these studies have been summarized in earlier reviews (Gaur et al 2012 b;Upadhyaya et al 2011 ;Varshney et al 2007 ).…”

Section: Quantitative Trait Loci (Qtls)mentioning

confidence: 99%

Advances in Chickpea Genomics

Gaur

Thudi

Srinivasan

et al. 2013

Legumes in the Omic Era

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Chickpea ( Cicer arietinum L.), the second largest consumed pulse crop of the world after common bean, is grown in over 50 countries and traded across 140 countries. After several decades of slow progress, the recent years have witnessed spectacular progress in development of genetic (mapping populations) and genomic resources (structural and functional molecular markers, integrated genetic map and mapping of genes/quantitative trait loci; QTLs) in this crop. QTLs associated with traits of interest including resistance against wilt, Ascochyta blight, Botrytis grey mould and rust; tolerance against salinity and drought and agronomic traits have been identifi ed and validated. A more than 30 genetic linkage maps available in this crop are useful resources for genetic analysis and marker assisted breeding. Genomic tools like bacterial artifi cial chromosome (BAC) libraries, expressed sequence tags (ESTs) and targeting induced local lesions in genome (TILLING) mutants have been developed in chickpea to facilitate the genome sequencing efforts in this crop. A major landmark in chickpea genomics has been the publication of 738 Mb draft whole genome sequence assembly of a kabuli variety, CDC Frontier. Now, chickpea is one of the most advanced grain legumes in terms of availability of genomic resources. Efforts have already begun on application of these genomics resources in chickpea improvement. This book chapter provides an update on the development of genetic and genomic resources for chickpea and their current and potential uses in chickpea improvement.

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“…Later several studies on inter-and intraspecific recombinant inbred line (RIL) populations revealed that the resistance genes (foc1 and foc3, foc4 and foc5) against Fusarium wilt races 1, 3, 4 and 5 are organized in two adjacent resistance gene clusters on Linkage Group II (LG II). These two gene clusters are flanked by sequence-tagged microsatellite (STMS) markers GA16 and TA96 (foc1-foc4 cluster) and TA96 and TA27 (foc3-foc5 cluster), respectively (Winter et al 2000;Sharma & Muehlbauer 2007;Cobos et al 2009;Gowda et al 2009;Halila et al 2009). Halila et al (2009) located foc 0 2 /foc 0 2 in a region where genes for resistance to wilt races 1, 2, 3, 4 and 5 have previously been reported using data from two mapping populations (CA2139/JG62 and CA2156/JG62).…”

mentioning

confidence: 99%

Molecular mapping of QTLs for resistance to early and late Fusarium wilt in chickpea

Patil¹,

Ravikumar²,

Bhat³

et al. 2014

Czech J. Genet. Plant Breed.

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Patil B.S., Ravikumar R.L., Bhat J.S., Soregaon C.D. (2014): Molecular mapping of QTLs for resistance to early and late Fusarium wilt in chickpea. Czech J. Genet. Plant Breed., 50: 171-176.A molecular map of chickpea was constructed using F 9 :F 10 recombinant inbred lines from an intraspecific cross between Fusarium wilt susceptible (JG 62) and resistant (WR 315) genotypes. A total of 23 markers with LOD scores of > 3.0 were mapped on the recombinant inbred lines (RILs). Twenty sequence tagged microsatellites (STMSs) and three amplified fragment length polymorphisms (AFLPs) covered 300.2 cM in five linkage groups at an average inter-marker distance of 13 cM. Early and late wilting due to Fusarium infection was recorded in RILs at 30 and 60 DAS, respectively. There was a significant variation among RILs for wilt resistance for both early and late wilting. QTLs associated with early (30 days after sowing (DAS)) and late (60 DAS) wilting are located on LG II. The flanking markers for these QTLs were the same as those of previous reports. Five STMS markers located on LG II of reference map (interspecific) were mapped on LG II of the present map (intraspecific) with minor changes in the order of markers indicating the conservation of these genomic regions across the Cicer species.

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Genetic analysis of agronomic traits in a wide cross of chickpea

Cited by 110 publications

References 51 publications

Fusarium Wilt Affecting Chickpea Crop

Fusarium Wilt Affecting Chickpea Crop

Advances in Chickpea Genomics

Molecular mapping of QTLs for resistance to early and late Fusarium wilt in chickpea

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