Leamy LJ, Kelly SA, Hua K, Pomp D. Exercise and diet affect quantitative trait loci for body weight and composition traits in an advanced intercross population of mice. Physiol Genomics 44: 1141-1153, 2012. First published October 9, 2012 doi:10.1152/physiolgenomics.00115.2012.-Driven by the recent obesity epidemic, interest in understanding the complex genetic and environmental basis of body weight and composition is great. We investigated this by searching for quantitative trait loci (QTLs) affecting a number of weight and adiposity traits in a G 10 advanced intercross population produced from crosses of mice in inbred strain C57BL/6J with those in a strain selected for high voluntary wheel running. The mice in this population were fed either a high-fat or a control diet throughout the study and also measured for four exercise traits prior to death, allowing us to test for pre-and postexercise QTLs as well as QTL-by-diet and QTL-by-exercise interactions. Our genome scan uncovered a number of QTLs, of which 40% replicated QTLs previously found for similar traits in an earlier (G 4) generation. For those replicated QTLs, the confidence intervals were reduced from an average of 19 Mb in the G 4 to 8 Mb in the G10. Four QTLs on chromosomes 3, 8, 13, and 18 were especially prominent in affecting the percentage of fat in the mice. About 1 ⁄3 of all QTLs showed interactions with diet, exercise, or both, their genotypic effects on the traits showing a variety of patterns depending on the diet or level of exercise. It was concluded that the indirect effects of these QTLs provide an underlying genetic basis for the considerable variability in weight or fat loss typically found among individuals on the same diet and/or exercise regimen.percentage fat and lean tissue; voluntary wheel running; weight loss IT IS WELL ESTABLISHED THAT body weight, weight gain, and obesity have a complex genetic and environmental basis (13,46). Among the many environmental factors influencing these sorts of traits, diet and exercise probably have been the most studied. With regard to diet, increased caloric (particularly high fat) consumption appears to be the major factor that accounts for an increase in the average body weight in human populations during the last three decades (59). Other factors clearly are involved, however, because some individuals who consume a high-fat diet gain little weight (51). With regard to exercise, it has long been known that physical activity of various kinds tends to decrease the probability of obesity and associated health problems such as various cancers (3,6,8,53). Yet this trend is not always clear, and there typically is considerable variability in the extent of weight loss even among individuals who routinely engage in exercise (25,30,60).Although these and other environmental factors affecting weight and/or weight gain have received the most attention because of the present obesity epidemic, much is known about the genetic basis of these traits as well. The bulk of the genetic variation in weight and ...