The transcription factor hypoxia-inducible factor-1␣ (HIF-1␣) is a master regulator of the cellular response to low oxygen. HIF-1␣ protein accumulates in hypoxia due to inhibition of prolyl hydroxylase enzymes, which under normoxic conditions use molecular oxygen to hydroxylate HIF-1␣ on two conserved proline residues (Pro 402 and Pro 564 ), thus targeting the protein for 26 S proteasome-dependent degradation. A functional mitochondrial electron transport chain is known to be necessary for HIF-1␣ stabilization in hypoxia. It has been reported that reactive oxygen species (ROS), produced under hypoxia by complex III of the mitochondrial electron transport chain, play a critical role in the stabilization of the HIF-1␣ protein, possibly by directly inhibiting prolyl hydroxylase enzymes. In contrast, we found that ROS production by complex III is not required for hypoxia-induced HIF-1␣ stabilization. Thus, reestablishing mitochondrial oxygen consumption in the presence of a complex III inhibitor by using an artificial electron donor to complex IV or by overexpressing Ciona intestinalis alternative oxidase results in HIF-1␣ protein stabilization in hypoxia. Furthermore, five inhibitors that target different sites of the mitochondrial electron transport chain have similar effects on the HIF-1␣ protein half-life in hypoxia but vary in their effects on mitochondrial ROS production. Finally, ROS do not regulate prolyl hydroxylase activity directly. We conclude that HIF-1␣ protein stabilization in hypoxia occurs independently of mitochondrial ROS production. However, mitochondria can modulate the cellular hypoxic response through altered respiratory activity, likely by regulating the cellular oxygen availability.Hypoxia induces a complex transcriptional program designed to improve cellular oxygen supply and adapt cellular metabolism to the lack of oxygen. This hypoxic response is mediated by hypoxia-inducible factor (HIF), 2 a heterodimeric transcription factor consisting of an oxygen-regulated ␣ subunit (HIF-1␣ and HIF-2␣) and a constitutively expressed  subunit. The oxygen-dependent regulation of the ␣ subunit occurs at the level of its protein stability. At normal oxygen concentration, a family of prolyl hydroxylase (PHD) enzymes catalyzes the hydroxylation of two conserved proline residues in HIF-1␣ and HIF-2␣ (1, 2). This reaction is dependent on both oxygen, which is a cosubstrate, and non-heme-reduced Fe 2ϩ , bound to the catalytic center of PHD enzymes. Hydroxylation of HIF-1␣ and HIF-2␣ at either of the two proline residues creates a recognition site for binding to the Von Hippel-Lindau (pVHL) protein. Binding of HIF-1␣ and HIF-2␣ to pVHL results in polyubiquitination by the pVHL-associated E3 ubiquitin ligase and degradation by the 26 S proteasome. Under hypoxic conditions, lack of oxygen inhibits PHD activity, thus leading to HIF-1␣ and HIF-2␣ protein stabilization and accumulation in the nucleus.The mitochondrial electron transport chain (ETC), which consumes the vast majority of cellular oxygen and therefore...