Generalizing Deep Models for Ultrasound Image Segmentation

Dou

IEEE Trans. Med. Imaging

et al. 2020

315

185

Unsupervised domain adaptation has increasingly gained interest in medical image computing, aiming to tackle the performance degradation of deep neural networks when being deployed to unseen data with heterogeneous characteristics. In this work, we present a novel unsupervised domain adaptation framework, named as Synergistic Image and Feature Alignment (SIFA), to effectively adapt a segmentation network to an unlabeled target domain. Our proposed SIFA conducts synergistic alignment of domains from both image and feature perspectives. In particular, we simultaneously transform the appearance of images across domains and enhance domain-invariance of the extracted features by leveraging adversarial learning in multiple aspects and with a deeply supervised mechanism. The feature encoder is shared between both adaptive perspectives to leverage their mutual benefits via end-to-end learning. We have extensively evaluated our method with cardiac substructure segmentation and abdominal multi-organ segmentation for bidirectional crossmodality adaptation between MRI and CT images. Experimental results on two different tasks demonstrate that our SIFA method is effective in improving segmentation performance on unlabeled target images, and outperforms the state-of-the-art domain adaptation approaches by a large margin.

Section: Discussionmentioning

confidence: 99%

Unsupervised Bidirectional Cross-Modality Adaptation via Deeply Synergistic Image and Feature Alignment for Medical Image Segmentation

Dou

IEEE Trans. Med. Imaging

et al. 2020

315

185

“…shows an example image for each analyzed dataset; in the context of generalization among different datasets, Yan et al [57] evaluated the average vessel segmentation performance on three retinal fundus image datasets under the three-dataset training condition, while pair-wisely assessing the cross-dataset performance on two datasets under the other one-dataset training condition.Yang et al[58] proposed an alternative approach using adversarial appearance rendering to relieve the burden of re-training for Ultrasound imaging datasets. Differently, we thoroughly evaluate all possible training/testing conditions (for a total of 21 configurations) on each dataset to confirm the intra-and cross-dataset generalization ability by incrementally injecting samples from the other datasets at hand.With regard to the 4-fold cross-validation, we partitioned the datasets #1, #2, and #3 into 4 folds by using the following patient indices:{[1, .…”

mentioning

confidence: 99%

USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets

et al. 2019

Prostate cancer is the most common malignant tumors in men but prostate Magnetic Resonance Imaging (MRI) analysis remains challenging. Besides whole prostate gland segmentation, the capability to differentiate between the blurry boundary of the Central Gland (CG) and Peripheral Zone (PZ) can lead to differential diagnosis, since the frequency and severity of tumors differ in these regions. To tackle the prostate zonal segmentation task, we propose a novel Convolutional Neural Network (CNN), called USE-Net, which incorporates Squeeze-and-Excitation (SE) blocks into U-Net, i.e., one of the most effective CNNs in biomedical image segmentation. Especially, the SE blocks are added after every Encoder (Enc USE-Net) or Encoder-Decoder block (Enc-Dec USE-Net). This study evaluates the generalization ability of CNN-based architectures on three T2-weighted MRI datasets, each one consisting of a different number of patients and heterogeneous image characteristics, collected by different institutions. The following mixed scheme is used for training/testing: (i ) training on either each individual dataset or multiple prostate MRI datasets and (ii ) testing on all three datasets with all possible training/testing combinations. USE-Net is compared against three stateof-the-art CNN-based architectures (i.e., U-Net, pix2pix, and Mixed-Scale Dense Network), along with a semi-automatic continuous max-flow model. The results show that training on the union of the datasets generally outperforms training on each dataset separately, allowing for both intra-/crossdataset generalization. Enc USE-Net shows good overall generalization under any training condition, while Enc-Dec USE-Net remarkably outperforms the other methods when trained on all datasets. These findings reveal that the SE blocks' adaptive feature recalibration provides excellent cross-dataset generalization when testing is performed on samples of the datasets used during training. Therefore, we should consider multi-dataset training and SE

“…Diversifying the training data by creating larger datasets is a possible solution, but recent medical imaging studies [21,23,24] have shown that it does not guarantee improved generalization. DA methods try to minimize the dataset variation, while retaining the distinguishing aspects for task classifier, and have been shown to generalize well in image segmentation tasks for multiple modalities [25][26][27].…”

Section: Challenge Of Dataset Variationsmentioning

confidence: 99%

Advancing Medical Imaging Informatics by Deep Learning-Based Domain Adaptation

Choudhary

Zhu

et al. 2020

Yearb Med Inform

Introduction: There has been a rapid development of deep learning (DL) models for medical imaging. However, DL requires a large labeled dataset for training the models. Getting large-scale labeled data remains a challenge, and multi-center datasets suffer from heterogeneity due to patient diversity and varying imaging protocols. Domain adaptation (DA) has been developed to transfer the knowledge from a labeled data domain to a related but unlabeled domain in either image space or feature space. DA is a type of transfer learning (TL) that can improve the performance of models when applied to multiple different datasets. Objective: In this survey, we review the state-of-the-art DL-based DA methods for medical imaging. We aim to summarize recent advances, highlighting the motivation, challenges, and opportunities, and to discuss promising directions for future work in DA for medical imaging. Methods: We surveyed peer-reviewed publications from leading biomedical journals and conferences between 2017-2020, that reported the use of DA in medical imaging applications, grouping them by methodology, image modality, and learning scenarios. Results: We mainly focused on pathology and radiology as application areas. Among various DA approaches, we discussed domain transformation (DT) and latent feature-space transformation (LFST). We highlighted the role of unsupervised DA in image segmentation and described opportunities for future development. Conclusion: DA has emerged as a promising solution to deal with the lack of annotated training data. Using adversarial techniques, unsupervised DA has achieved good performance, especially for segmentation tasks. Opportunities include domain transferability, multi-modal DA, and applications that benefit from synthetic data.