The evaluation of BPS Wilson loops in N = 6, D = 3 Chern-Simons matter theory is reduced to ordinary matrix integrals via localization technique. It is easy to check that the vacuum expectation value of 1/2 BPS Wilson loops at leading order in planar limit agrees with the regularized classical string action, via AdS/CFT. Then the subleading terms in principle can be calculated by treating the string theory semi-classically. In this article we calculate the one-loop determinant for the fluctuation modes of holographic Wilson loop as IIA string in the dual geometry AdS 4 × CP 3 . The fermionic normal mode frequencies are expressed in terms of the hypergeometric function, and we compute the one-loop effective action numerically. The discrepancy with localization formula is due to the zero mode normalization constant, which is yet to be determined.