Summary. This chapter provides an overview on the self-organised map (SOM) in the context of manifold mapping. It first reviews the background of the SOM and issues on its cost function and topology measures. Then its variant, the visualisation induced SOM (ViSOM) proposed for preserving local metric on the map, is introduced and reviewed for data visualisation. The relationships among the SOM, ViSOM, multidimensional scaling, and principal curves are analysed and discussed. Both the SOM and ViSOM produce a scaling and dimension-reduction mapping or manifold of the input space. The SOM is shown to be a qualitative scaling method, while the ViSOM is a metric scaling and approximates a discrete principal curve/surface. Examples and applications of extracting data manifolds using SOM-based techniques are presented.Key words: Self-organising maps, principal curve and surface, data visualisation, topographic mapping
IntroductionFor many years, artificial neural networks have been studied and used to construct information processing systems based on or inspired by natural biological neural structures. They not only provide solutions with improved performance when compared with traditional problem-solving methods, but also give a deeper understanding of human cognitive abilities. Among the various existing neural network architectures and learning algorithms, Kohonen's self-organising map (SOM) [35] is one of most popular neural network models. Developed for an associative memory model, it is an unsupervised learning algorithm with simple structures and computational forms, and is motivated by the retina-cortex mapping. Self-organisation in general is a fundamental pattern recognition process, in which intrinsic inter-and intra-pattern relationships within the data set are learnt without the presence of a potentially biased or subjective external influence. The SOM can provide topologically