Salmonella typhimurium FliG and FliM are two of three proteins known to be necessary for flagellar morphogenesis as well as energization and switching of flagellar rotation. We have determined FliG and FliM levels in cellular fractions and in extended flagellar basal bodies, using antibodies raised against the purified proteins. Both proteins were found predominantly in the detergent-solubilized particulate fraction containing flagellar structures. Basal flagellar fragments could be separated from partially constructed basal bodies by gel filtration chromatography. FliG and FliM were present in an approximately equimolar ratio in all gel-filtered fractions. FliG and FliM copy numbers, estimated relative to that of the hook protein from the early fractions containing long, basal, flagellar fragments, were (means ؎ standard errors) 41 ؎ 10 and 37 ؎ 13 per flagellum, respectively. Extended structures were present in the earliest identifiable basal bodies. Immunoelectron microscopy and immunoblot gel analysis suggested that the FliG and, to a less certain degree, the FliM contents of these structures were the same as those for the complete basal bodies. These facts are consistent with the postulate that FliG and FliM affect flagellar morphogenesis as part of the extended basal structure, formation of which is necessary for assembly of more-distal components of the flagellum. The determined stoichiometries will provide important constraints to modelling energization and switching of flagellar rotation.The propulsion of swimming bacteria is driven by the rotation of motile organelles, the flagella. Each flagellum consists of an external, rigid, helical filament contiguous with an elaborate basal body. The flagellar basal body traverses the cell wall and cytoplasmic membrane, protruding into the cytoplasm. It harbors machinery for energization and switching of flagellar rotation. The molecular motors that drive flagellar rotation are distinct from other biological molecular motors studied thus far in that they are capable of bidirectional force generation and are energized by transmembrane ion gradients instead of ATP (26).Proteins specifically involved in motility have been identified on the basis of the analysis of paralyzed mutants (mot) in the enteric bacteria Escherichia coli and Salmonella typhimurium. Five proteins have thus been identified from a total of 50 or so proteins required for flagellation and chemotaxis (18). Two, MotA and MotB, are integral membrane proteins whose expression determines the assembly of the intramembrane particle ring structures of the flagellar basal body (13). The other three, FliG, FliM, and FliN, have been localized to recently described cytoplasmic extensions of the flagellar basal body by immunoelectron microscopy (7, 39). Mutations that give rise to nonflagellate (fla) or nonchemotactic (che) bacteria have also been isolated in each of these proteins (37). To account for these and additional suppressor mutation data, it has been postulated that these proteins form a macromolecul...