2008
DOI: 10.1002/dvdy.21417
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Gene expression analysis on sections of zebrafish regenerating fins reveals limitations in the whole‐mount in situ hybridization method

Abstract: The caudal fin of adult zebrafish is used to study the molecular mechanisms that govern regeneration processes. Most reports of gene expression in regenerating caudal fins rely on in situ hybridization (ISH) on whole-mount samples followed by sectioning of the samples. In such reports, expression is mostly confined to cells other than those located between the dense collagenous structures that are the actinotrichia and lepidotrichia. Here, we re-examined the expression of genes by performing ISH directly on cr… Show more

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Cited by 74 publications
(67 citation statements)
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“…We detected msxb, a marker of de-differentiated cells and of the distal blastema (Nechiporuk and Keating, 2002), in the entire blastema and in the differentiation zone of the 3 dpa regenerating fin (supplementary material Fig. S1B), consistent with the reported expression of msxb in osteoblasts (Smith et al, 2008). A second…”
Section: Notch Pathway Genes Are Expressed In Blastema Cellssupporting
confidence: 87%
“…We detected msxb, a marker of de-differentiated cells and of the distal blastema (Nechiporuk and Keating, 2002), in the entire blastema and in the differentiation zone of the 3 dpa regenerating fin (supplementary material Fig. S1B), consistent with the reported expression of msxb in osteoblasts (Smith et al, 2008). A second…”
Section: Notch Pathway Genes Are Expressed In Blastema Cellssupporting
confidence: 87%
“…from 72 hpa onwards (Smith et al, 2006;Smith et al, 2008;Brown et al, 2009). The gene expression analysis at early stages of fin regeneration presented here reveals that some of the genes that specify skeletal lineages are present as early as 24 hpa.…”
Section: Lepidotrichia Regeneration Is Initiated As Early As 24 Hpa Imentioning
confidence: 70%
“…For cross sections, fins were embedded in gelatin, processed using standard conditions and sectioned (10-14 m) using a cryostat (Leica). In situ hybridisation on cryosections was performed as described by Smith et al (Smith et al, 2008). Details for RNA probes for sox9a, osterix (sp7 -Zebrafish Information Network), col1a2 and col10a1 genes were described by Li et al (Li et al, 2009).…”
Section: Whole-mount In Situ Hybridisationmentioning
confidence: 99%
See 1 more Smart Citation
“…In situ hybridization of whole fins was performed as described (Poss et al, 2000b) with 15 minute proteinase K (20 mg/ml, Sigma-Aldrich) treatment. In situ hybridization on fin cryosections was according to (Smith et al, 2008).…”
Section: In Situ Hybridizationmentioning
confidence: 99%