Vibrio fischeri colonizes the squid Euprymna scolopes in a mutualistic symbiosis. Hatchling squid lack these bacterial symbionts, and V. fischeri strains must compete to occupy this privileged niche. We cloned a V. fischeri gene, designated pilA, that contributes to colonization competitiveness and encodes a protein similar to type IV-A pilins. Unlike its closest known relatives, Vibrio cholerae mshA and vcfA, pilA is monocistronic and not clustered with genes associated with pilin export or assembly. Using wild-type strain ES114 as the parent, we generated an in-frame pilA deletion mutant, as well as pilA mutants marked with a kanamycin resistance gene. In mixed inocula, marked mutants were repeatedly outcompeted by ES114 (P < 0.05) but not by an unmarked pilA mutant, for squid colonization. In contrast, the ratio of mutant to ES114 CFUs did not change during 70 generations of coculturing. The competitive defect of pilA mutants ranged from 1.7-to 10-fold and was more pronounced when inocula were within the range estimated for V. fischeri populations in Hawaiian seawater (200 to 2,000 cells/ml) than when higher densities were used. ES114 also outcompeted a pilA mutant by an average of twofold at lower inoculum densities, when only a fraction of the squid became infected, most by only one strain. V. fischeri strain ET101, which was isolated from Euprymna tasmanica and is outcompeted by ES114, lacks pilA; however, 11 other diverse V. fischeri isolates apparently possess pilA. The competitive defect of pilA mutants suggests that cell surface molecules may play important roles in the initiation of beneficial symbioses in which animals must acquire symbionts from a mixed community of environmental bacteria.All animals and plants are hosts to a native microbiota. These microbial symbionts often contribute to the normal health and development of their respective hosts in exchange for a relatively privileged niche. Many plant and animal symbionts are transmitted horizontally, through the environment after embryogenesis, and are not directly inherited through germplasm from the previous generation. Therefore, with each host generation, environmental bacteria must compete to colonize the empty niches within new host individuals. In perhaps the best-studied example of such competition, mixed communities of rhizobia compete for access to the roots and nodules of leguminous plants. Many complex traits, including antibiotic production, motility, and specific cell surface attributes contribute to the nodulation competitiveness of rhizobial strains (3,9,41,46). Less is known about the competition between environmental bacteria for colonization of animal hosts, especially the natural modes of infection by the native, nonpathogenic microbiota.The light organ symbiosis between the luminescent bacterium Vibrio fischeri and the nocturnal Hawaiian squid Euprymna scolopes serves as a model chronic, mutualistic association between extracellular bacteria and animal epithelia (32,43). At the time of hatching, the light organs of juvenile...