The development of
small molecule activity-based probes (ABPs)
is an evolving and powerful area of chemistry. There is a major need
for synthetically accessible and specific ABPs to advance our understanding
of enzymes in health and disease. α-Glucosidases are involved
in diverse physiological processes including carbohydrate assimilation
in the gastrointestinal tract, glycoprotein processing in the endoplasmic
reticulum (ER), and intralysosomal glycogen catabolism. Inherited
deficiency of the lysosomal acid α-glucosidase (GAA) causes
the lysosomal glycogen storage disorder, Pompe disease. Here, we design
a synthetic route for fluorescent and biotin-modified ABPs for in vitro and in situ monitoring of α-glucosidases.
We show, through mass spectrometry, gel electrophoresis, and X-ray
crystallography, that α-glucopyranose configured cyclophellitol
aziridines label distinct retaining α-glucosidases including
GAA and ER α-glucosidase II, and that this labeling can be tuned
by pH. We illustrate a direct diagnostic application in Pompe disease
patient cells, and discuss how the probes may be further exploited
for diverse applications.