~~~Eschevichia cofi strains causing human extra-intestinal infections may be divided into two groups, B, and B, according to the electrophoretic patterns of carboxylesterase B. This study compares the restriction fragment length polymorphism (RFLP) of ribosomal DNA (rDNA) for 45 B, strains and 45 B, strains to examine the genetic structure of B, strains and to distinguish them from B, strains. The isolates were chosen for diversity in their allozymes of esterases, B, A, C and I, their production of virulence factors (a-haemolysin, mannose resistant haemagglutinin and cytotoxic necrotizing factor) and certain 0 antigens, and their pathological and geographical origins. DNA was digested with Hind111 and BamHI restriction enzymes and analysed by Southern blotting. The resulting rDNA RFLP patterns of B, strains were distinct from those of the B, strains. Moreover, the B, strains appeared to be less heterogeneous than the B, strains. The B, strains gave 13 ribotypes (resulting from the combination of the rDNA RFLP patterns obtained with Hind111 and BamHI digestions) while the B, strains gave 32 ribotypes. Correspondence analysis of the data showed that several clusters of strains were identified in the B, strains by particular ribotypes, certain associations of esterase B and A electrophoretic variants, 0 serotypes and virulence factor production. In contrast, these parameters appeared to be unrelated in the B, strains, reflecting their heterogeneity. These findings, which differentiate two levels of genetic heterogeneity within E. cofi pathogenic isolates, indicate that the B, strains constitute a phylogenetically distinct group within the species.