ABSTRACIHigh molecular weight RNA (35S) isolated from avian myeloblastosis virus directs the cell-free synthesis of two prominent polypeptides of 180,000 and 76,000 molecular weight. The latter polypeptide has previously been identified as the precursor to the group-specific antigens of the virus ("gag" proteins) [Vogt, V. M., Eisenman, R. & Diggelmann, H. (1975) J. Mol. Biol. 96,. Two-dimensional tryptic peptide analyses of the [15S]methionine-labeled peptides demonstrate that the 180,000-dalton product is a polyprotein that can account for all the peptides of the avian myeloblastosis virus DNA polymerase (DNA nucleotidyltransferase, EC 2.7.7.7.) and those of the gag viral proteins. This is direct confirmation of the genomic order of the viral structural genes, placing the polymerase gene adjacent to the 5'-proximal gag gene of the virus. Furthermore, our findings suggest that the primary polymerase gene product is the 3 subunit of the enzyme. These results are discussed in relation to the proposed structural gene map for the avian retraviruses and suggest a model for the in vivo processing of the viral polymerase.The structural proteins of the retraviruses are synthesized in vivo as large polypeptide precursors which are cleaved subsequently by proteolysis to the structural proteins characteristic of the mature virus particle (1, 2). Similarly, we, as well as others, have demonstrated that the f subunit of the avian myeloblastosis virus (AMV) DNA polymerase (DNA nucleotidyltransferase, EC 2.7.7.7) is the precursor to the a subunit and that the a subunit is derived proteolytically from the fi subunit (3-5). In the present communication we demonstrate that the ,B subunit of AMV DNA polymerase and the group-specific antigen ("gag") structural proteins of the virus are synthesized as a 180,000 molecular weight (Mr) polyprotein in a cell-free translational system. These two proteins can account for all of the [35S]methionine-labeled peptides present in the polyprotein. Taken in conjunction with previously reported observations (1, 2, 6-10), these results directly demonstrate the gene for AMV DNA polymerase is adjacent to the 5'-proximal gag gene. This defines the structural gene order within the viral genome and suggests a scheme for the processing of the AMV DNA polymerase in vivo.MATERIALS AND METHODS Virus Preparations. AMV was obtained from the plasma of infected chicks provided through contract number N01CP33291 under the Virus Cancer Program of the National Cancer Institute. The virus was concentrated and purified as described previously (11).Extraction of Viral RNA. Viral RNA was prepared from fresh viral pellets and extracted as described previously (12). Viral RNA was fractionated on sucrose gradients and the 70SThe costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertusemnent" in accordance with 18 U. S. C. §1734 solely to indicate this fact.
4951RNA fraction was precipitated with ethanol; pellets were dissolv...