Fundamental and Applicative Aspects of the Unfolded Protein Response in Yeasts

Ishiwata-Kimata, Yuki; Kimata, Yukio

doi:10.3390/jof9100989

Cited by 3 publications

(1 citation statement)

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“…This yeast has numerous unique advantages compared to other model systems. First, it has a simple eukaryotic cellular organization and numerous conserved biological processes, such as those involved in the cell cycle, organelle function, energy metabolism, protein turnover and folding, the secretory pathway, mitochondrial biology, signal transduction, and gene interaction and recombination [33][34][35][36]. A few Nobel prizes have been awarded for discoveries made in yeast [37].…”

Section: Brief Description Of Neurodegenerative Diseases and The Expe...mentioning

confidence: 99%

Saccharomyces cerevisiae as a Model for Studying Human Neurodegenerative Disorders: Viral Capsid Protein Expression

Bayandina,

Mukha

2023

IJMS

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In this article, we briefly describe human neurodegenerative diseases (NDs) and the experimental models used to study them. The main focus is the yeast Saccharomyces cerevisiae as an experimental model used to study neurodegenerative processes. We review recent experimental data on the aggregation of human neurodegenerative disease-related proteins in yeast cells. In addition, we describe the results of studies that were designed to investigate the molecular mechanisms that underlie the aggregation of reporter proteins. The advantages and disadvantages of the experimental approaches that are currently used to study the formation of protein aggregates are described. Special attention is given to the similarity between aggregates that form as a result of protein misfolding and viral factories—special structural formations in which viral particles are formed inside virus-infected cells. A separate part of the review is devoted to our previously published study on the formation of aggregates upon expression of the insect densovirus capsid protein in yeast cells. Based on the reviewed results of studies on NDs and related protein aggregation, as well as viral protein aggregation, a new experimental model system for the study of human NDs is proposed. The core of the proposed system is a comparative transcriptomic analysis of changes in signaling pathways during the expression of viral capsid proteins in yeast cells.

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Section: Brief Description Of Neurodegenerative Diseases and The Expe...mentioning

confidence: 99%

Saccharomyces cerevisiae as a Model for Studying Human Neurodegenerative Disorders: Viral Capsid Protein Expression

Bayandina,

Mukha

2023

IJMS

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The mammalian Ire1 inhibitor, 4µ8C, exhibits broad anti-Aspergillusactivityin vitroand in a treatment model of fungal keratitis

Kamath,

Adams,

Lightfoot

et al. 2024

Preprint

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ObjectiveThe fungal unfolded protein response consists of a two-component relay in which the ER-bound sensor, IreA, splices and activates the mRNA of the transcription factor, HacA. Previously, we demonstrated thathacAis essential forAspergillus fumigatusvirulence in a murine model of fungal keratitis (FK), suggesting the pathway could serve as a therapeutic target. Here we investigate the antifungal properties of known inhibitors of the mammalian Ire1 protein bothin vitroand in a treatment model of FK.MethodsThe antifungal activity of Ire1 inhibitors was tested against conidia of severalA. fumigatusisolates by a microbroth dilution assay and against fungal biofilm by XTT reduction. The influence of 4μ8C onhacAmRNA splicing inA. fumigatuswas assessed through gel electrophoresis and qRT-PCR of UPR regulatory genes. The toxicity and antifungal profile of 4μ8C in the cornea was assessed by applying drops to uninfected orA. fumigatus-infected corneas 3 times daily starting 4 hours post-inoculation. Corneas were evaluated daily through slit-lamp imaging and optical coherence tomography, or at endpoint through histology or fungal burden quantification via colony forming units.ResultsAmong six Ire1 inhibitors screened, the endonuclease inhibitor 4μ8C displayed the strongest antifungal profile with an apparent fungicidal action. The compound both blocked conidial germination and hyphal metabolism ofA. fumigatusAf293 in the same concentration range that blockedhacAsplicing and UPR gene induction (60-120 µM). Topical treatment of sham-inoculated corneas with 0.5 and 2.5 mM 4μ8C did not impact corneal clarity, but did transiently inhibit epithelialization of corneal ulcers. Relative to vehicle-treated Af293-infected corneas, treatment with 0.5 and 2.5 mM drug resulted in a 50% and >90% reduction in fungal load, respectively, the latter of which corresponded to an absence of clinical signs of infection or corneal pathology.ConclusionThein vitrodata suggest that 4μ8C displays antifungal activity againstA. fumigatusthrough the specific inhibition of IreA. Topical application of the compound to the murine cornea can furthermore block the establishment of infection, suggesting this class of drugs can be developed as novel antifungals that improve visual outcomes in FK patients.

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Enforcement and Enlargement of the Saccharomyces cerevisiae Endoplasmic Reticulum through Artificial Evocation of the Unfolded Protein Response

Masaki,

Yukio

2024

IgMin Res

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Upon dysfunction of the Endoplasmic Reticulum (ER), eukaryotic cells provoke a gene expression program, namely, the Unfolded Protein Response (UPR), leading to an increase in the size and function of the ER. In the yeast Saccharomyces cerevisiae, the UPR is modulated by the Hac1i protein, which is a transcription factor produced by ER stress. When the UPR is artificially triggered under non-stress conditions by artificial expression of the Hac1i protein, S. cerevisiae cells carry an enforced and enlarged ER, which allows us to obtain commercially valuable materials such as secretory proteins and functional lipids abundantly.

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Fundamental and Applicative Aspects of the Unfolded Protein Response in Yeasts

Cited by 3 publications

References 123 publications

Saccharomyces cerevisiae as a Model for Studying Human Neurodegenerative Disorders: Viral Capsid Protein Expression

Saccharomyces cerevisiae as a Model for Studying Human Neurodegenerative Disorders: Viral Capsid Protein Expression

The mammalian Ire1 inhibitor, 4µ8C, exhibits broad anti-Aspergillusactivityin vitroand in a treatment model of fungal keratitis

Enforcement and Enlargement of the Saccharomyces cerevisiae Endoplasmic Reticulum through Artificial Evocation of the Unfolded Protein Response

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