We characterized the uncoupling activity of the plant uncoupling protein from Solanum tuberosum (StUCP) using mitochondria from intact potato tubers or from yeast (Saccharomyces cerevisiae) expressing the StUCP gene. Compared with mitochondria from transfected yeast, StUCP is present at very low levels in intact potato mitochondrial membranes (at least thirty times lower) as shown by immunodetection with anti-UCP1 antibodies. Under conditions that ruled out undesirable effects of nucleotides and free fatty acids on uncoupling activity measurement in plant mitochondria, the linoleic acid-induced depolarization in potato mitochondria was insensitive to the nucleotides ATP, GTP, or GDP. In addition, sensitivity to linoleic acid was similar in potato and in control yeast mitochondria, suggesting that uncoupling occurring in potato mitochondria was because of a UCP-independent proton diffusion process. By contrast, yeast mitochondria expressing StUCP exhibited a higher sensitivity to free fatty acids than those from the control yeast and especially a marked proton conductance in the presence of low amounts of linoleic acid. However, this fatty acid-induced uncoupling was also insensitive to nucleotides. Altogether, these results suggest that uncoupling of oxidative phosphorylation and heat production cannot be the dominant feature of StUCP expressed in native potato tissues. However, it could play a role in preventing reactive oxygen species production as proposed for mammalian UCP2 and UCP3.The discovery in plants of a mitochondrial uncoupling protein resembling uncoupling proteins from mammals raised the possibility of a new uncoupling mechanism involving a transport pathway for backflow of protons into the matrix of plant mitochondria (1, 2). Indeed, a protein fraction containing a purine nucleotide-sensitive, free fatty acid-activated uncoupling activity, called PUMP, has been isolated from potato tuber mitochondria and characterized after reconstitution in proteoliposomes (1). In addition, various cDNAs coding for putative UCPs were identified in plants such as potato, Arabidopsis thaliana, and skunk cabbage (Symplocarpus foetidus), a thermogenic plant from the Aracea family (3-6). Recently, the Arabidopsis thaliana AtUCP1 gene was expressed in Escherichia coli and the isolated protein reconstituted into liposomes (7). Like mammalian UCPs, the plant UCP 1 requires free fatty acids for its activity and is inhibited by purine nucleotides (GDP, ATP, GTP, or ADP) (7-10). At the mitochondrial level, it has been proposed that ATP, GTP, or GDP were absolutely required to get a fully coupled state in potato tuber mitochondria oxidizing succinate (1, 8). Similarly, it has been suggested that the fatty acid-induced uncoupling in wheat mitochondria was sensitive to purine nucleotides (11).In this paper, we sought to characterize better the properties of plant UCP-like protein by comparing the fatty acid-dependent uncoupling capacity of either native UCP present in intact potato mitochondria or StUCP expressed at a high lev...