The Walker A and B motifs of nucleotide binding domains (NBDs) of Cdr1p though almost identical to all ABC transporters, has unique substitutions. We have in the past shown that Trp326 of Walker B and Cys193 of Walker A motifs of N-terminal NBD of Cdr1p have distinct roles in ATP binding and hydrolysis, respectively. In the present study, we have examined the role of a well conserved Asp327 in the Walker B motif of the N-terminal NBD which is preceded (Trp326) and followed (Asn328) by atypical amino acid substitutions and compared it with its equivalent well conserved Asp1026 of the C-terminal NBD of Cdr1p. We observed that the removal of the negative charge by D327N, D327A, D1026N, D1026A and D327N/D1026N substitutions, resulted in Cdr1p mutant variants that were severely impaired in ATPase activity and drug efflux. Importantly, all the mutant variants showed characteristics similar to those of wild type with respect to cell surface expression and photoaffinity drug analogue [ 125 I] IAAP and [ 3 H] azidopine labeling. While Cdr1p D327N mutant variant showed comparable binding with [α-32 P] 8-azido ATP, Cdr1p D1026N and Cdr1p D327N/D1026N mutant variants were crippled in nucleotide binding. That the two conserved carboxylate residues Asp327 and Asp1026 are functionally different was further evident from the pH profile of ATPase activity. Cdr1p D327N mutant variant showed ∼40% enhancement of its residual ATPase activity at acidic pH while no such pH effect was seen with Cdr1p D1026N mutant variant. Our experimental data suggest that Asp327 of N-terminal NBD has acquired a new role to act as a catalytic base in ATP hydrolysis, a role normally conserved for Glu present adjacent to the conserved Asp in the Walker B motif of all the non-fungal transporters.One of the most clinically significant mechanisms of azoles resistance in the pathogenic fungi, C. albicans is an over expression of the drug efflux pumps encoding genes CDR1 and CDR2 belonging to the ABC (ATP-Binding Cassette) (1-7) and CaMDR1 belonging to MFS (Major Facilitator Superfamily) transporters (8)(9)(10). Among the ABC transporters, high level of expression of CDR1 invariably contributes to an increased efflux of fluconazole and thus corroborates its direct involvement in drug efflux (6,11,12). Hence, Cdr1p has not only acquired significant clinical importance but is also considered an important target in any design of strategies to combat antifungal resistance (7,13,14). *Corresponding author: E-mail: rp47@hotmail.com; Telephone: 91-11-26704509; Fax: 91-11-26717081. NIH Public Access
Media chemical and strainsPlasmids were maintained in Escherichia coli DH5α. E. coli was cultured in Luria-Bertani medium (Difco, BD Biosciences, NJ, USA) to which ampicillin was added (0.1 mg/ml). The yeast strains were cultured in YEPD broth (Bio101, Vista, CA, USA) or SD-ura -(Bio101). Table 2 lists all the strains used in this study.
MethodsSite-specific mutagenesis-Site directed mutagenesis was performed using quick-change mutagenesis system as described ...