Abstract:Diverse plant pathogens secrete cellulases to degrade plant cell walls. Previously, the plasmid-borne cellulase gene celA was shown to be important for the virulence of the gram-positive bacterium Clavibacter michiganensis in tomato. However, details of the contribution of cellulases to the development of wilting in tomato have not been well-determined. To better understand the contribution of cellulases to the virulence of C. michiganensis in tomato, a mutant lacking cellulase activity was generated and compl… Show more
“…Like plant expansins, no microbial expansins have been documented to have enzymatic activity (Jahr et al, 2000;Laine et al, 2000;Olarte-Lozano et al, 2014;Georgelis et al, 2015;Cosgrove, 2017;Tancos et al, 2018). The evolutionary history, taxonomic distribution, mechanism(s) of action and ecological function(s) of microbial expansins remain enigmatic in non-Plantae genetic backgrounds, and there is currently no framework for predicting their functional roles (Jahr et al, 2000;Saloheimo et al, 2002;Brotman et al, 2008;Georgelis et al, 2015;Junior et al, 2015;Hwang et al, 2019).…”
Summary
Plants must rearrange the network of complex carbohydrates in their cell walls during normal growth and development. To accomplish this, all plants depend on proteins called expansins that nonenzymatically loosen noncovalent bonding between cellulose microfibrils.
Surprisingly, expansin genes have more recently been found in some bacteria and microbial eukaryotes, where their biological functions are largely unknown.
Here, we reconstruct a comprehensive phylogeny of microbial expansin genes. We find these genes in all eukaryotic microorganisms that have structural cell wall cellulose, suggesting expansins evolved in ancient marine microorganisms long before the evolution of land plants. We also find expansins in an unexpectedly high diversity of bacteria and fungi that do not have cellulosic cell walls. These bacteria and fungi inhabit varied ecological contexts, mirroring the diversity of terrestrial and aquatic niches where plant and/or algal cellulosic cell walls are present.
The microbial expansin phylogeny shows evidence of multiple horizontal gene transfer events within and between bacterial and eukaryotic microbial lineages, which may in part underlie their unusually broad phylogenetic distribution. Overall, expansins are unexpectedly widespread in bacteria and eukaryotes, and the contribution of these genes to microbial ecological interactions with plants and algae has probbaly been underappreciated.
“…Like plant expansins, no microbial expansins have been documented to have enzymatic activity (Jahr et al, 2000;Laine et al, 2000;Olarte-Lozano et al, 2014;Georgelis et al, 2015;Cosgrove, 2017;Tancos et al, 2018). The evolutionary history, taxonomic distribution, mechanism(s) of action and ecological function(s) of microbial expansins remain enigmatic in non-Plantae genetic backgrounds, and there is currently no framework for predicting their functional roles (Jahr et al, 2000;Saloheimo et al, 2002;Brotman et al, 2008;Georgelis et al, 2015;Junior et al, 2015;Hwang et al, 2019).…”
Summary
Plants must rearrange the network of complex carbohydrates in their cell walls during normal growth and development. To accomplish this, all plants depend on proteins called expansins that nonenzymatically loosen noncovalent bonding between cellulose microfibrils.
Surprisingly, expansin genes have more recently been found in some bacteria and microbial eukaryotes, where their biological functions are largely unknown.
Here, we reconstruct a comprehensive phylogeny of microbial expansin genes. We find these genes in all eukaryotic microorganisms that have structural cell wall cellulose, suggesting expansins evolved in ancient marine microorganisms long before the evolution of land plants. We also find expansins in an unexpectedly high diversity of bacteria and fungi that do not have cellulosic cell walls. These bacteria and fungi inhabit varied ecological contexts, mirroring the diversity of terrestrial and aquatic niches where plant and/or algal cellulosic cell walls are present.
The microbial expansin phylogeny shows evidence of multiple horizontal gene transfer events within and between bacterial and eukaryotic microbial lineages, which may in part underlie their unusually broad phylogenetic distribution. Overall, expansins are unexpectedly widespread in bacteria and eukaryotes, and the contribution of these genes to microbial ecological interactions with plants and algae has probbaly been underappreciated.
“…The gh5 domain in Enterobacteriaceae is non-homologous to the GH5 domain in Xanthomonadaceae, and the exlx and gh5 domain structure in some Enterobacteriaceae is in reverse orientation compared to the gh5-exlx domain order in Xanthomonadaceae. A distinct gh5 domain that is truncated to 289 amino acids is found in Clavibacter michiganensis ( CelA ), and this is the only known microbial expansin that is fused to both a GH5 and CBM2 domain in a single coding sequence (27). This suggests there have been at least three independent origins of an expansin adjacent or fused to a gh5 family functional domain in bacterial plant pathogens.…”
19 Author Contributions: JR and LRS conceived of the study. JR designed and conducted 20 molecular protocols and lab experiments. LRS conducted computational analyses and 21 performed experiments. JR, LRS and RK interpreted experimental data. JR and LRS 22 wrote the first draft of the manuscript, and JR, LRS and RK added critical revisions. 23 2 24 Data Deposition Statement: Analysis scripts and input files associated with 25 reconstruction of phylogenetic trees are available at 26 https://github.com/lshapiro31/gh5.expansin.phylogenetics 27 3 Abstract 28All land plants depend on proteins called 'expansins' that non-enzymatically loosen structural 29 cellulose, enabling cell wall extension during normal growth. Surprisingly, expansin genes are 30 also present -but functionally uncharacterized -in taxonomically diverse bacteria and fungi that 31 do not produce cellulosic cell walls. Here, we find that Erwinia tracheiphila 32 (Enterobacteriaceae), the causative agent of bacterial wilt of cucurbits, has horizontally acquired 33 an operon with a microbial expansin (exlx) gene and a glycoside hydrolase family 5 (gh5) gene. 34 E. tracheiphila is an unusually virulent plant pathogen that induces systemic wilt symptoms 35 followed by plant death, and has only recently emerged into cultivated cucurbit populations in 36 temperate Eastern North America. Plant inoculation experiments with deletion mutants show that 37 EXLX-GH5 is a secreted virulence factor that confers efficient xylem movement and 38 colonization ability to E. tracheiphila. Bacterial colonization of xylem blocks sap flow, inducing 39 wilt symptoms and causing plant death. Together, these results suggest that the horizontal 40 acquisition of the exlx-gh5 locus was likely a key step driving the recent emergence of E. 41 tracheiphila. The increase in E. tracheiphila virulence conferred by microbial expansins, the 42 presence of this gene in many other bacterial and fungal wilt-inducing plant pathogen species, 43 and the amenability of microbial expansins to horizontal gene transfer suggest this gene may be 44 an under-appreciated virulence factor in taxonomically diverse agricultural pathogens. 45 46 4 Importance 47Erwinia tracheiphila is a bacterial plant pathogen that causes a fatal wilt infection in cucurbit 48 crop plants. Here, we report that E. tracheiphila has horizontally acquired a microbial expansin 49 gene (exlx) adjacent to a glycoside hydrolase family 5 (gh5) gene. Expansins are predominantly 50 associated with plants due to their essential role in loosening structural cell wall cellulose during 51 normal growth. We find that the EXLX and GH5 proteins in E. tracheiphila function as a single 52 complex to facilitate xylem colonization, possibly by manipulating the size of xylem structures 53 that normally exclude the passage of bacteria. This suggests that horizontal acquisition of the 54 exlx-gh5 locus was likely a key step in the recent emergence of E. tracheiphila as an unusually 55 virulent plant pathogen. The presence of microbial expansin gene...
“…CelA is considered to have an essential role in virulence. Several studies (Meletzus et al , 1993; Thapa et al , 2017; Hwang et al , 2019) showed that nonpathogenic mutant strains lacking celA restored their pathogenicity when the gene was reincorporated. However, in New York State and Uruguay 6% and 2.5% of the strains, respectively, did not amplify celA even though they were pathogenic (Tancos et al , 2015; Croce et al , 2016).…”
Section: Discussionmentioning
confidence: 99%
“…The PI contains genes coding for serine proteases (e.g., chpC , chpG , and ppaA ), important for host plant colonization, and a tomatinase ( tomA ), which putatively deactivates the plant immune system (Eichenlaub and Gartemann, 2011). Plasmids pCM1 and pCM2 carry genes coding for the endo‐β‐1,4‐glucanase CelA and the serine protease Pat‐1, respectively, which are critical factors for bacterial pathogenicity (Dreier et al , 1997; Hwang et al , 2019). Strains lacking either of these two genes are less virulent or nonpathogenic (Meletzus et al , 1993; Kleitman et al , 2008; Milijašević‐Marčić et al , 2012; Tancos et al , 2015).…”
Clavibacter michiganensis subsp. michiganensis (Cmm) causes bacterial wilt and canker in tomato, producing important economic losses worldwide. Its virulence has been related to several putative virulence factors present on a chromosomal pathogenicity island and on plasmids pCM1 and pCM2, in strain NCPPB382. We genotypically characterized a collection of Cmm isolates from the main greenhouse tomato‐producing areas of Argentina by BOX‐PCR fingerprinting and screened for the presence of genes and plasmids involved in pathogenicity by PCR. In addition, we evaluated in vitro cellulolytic activity and virulence in planta of selected strains. BOX‐PCR fingerprinting clustered strains into four groups. Group II was dominant and included the most virulent strains, while Group III was the smallest and had the least virulent strains. All local strains exhibited similar cellulolytic activity. Most of the examined strains carry two plasmids of similar size to those of NCPPB382, although there were strains with one or three plasmids. By PCR amplification of repA, pCM1 was detected only in strains belonging to Group III, which includes local strains closely related to reference strain NCPPB382. All analysed pathogenicity genes were widespread among strains, and so in strains belonging to Groups I and II, celA found on pCM1 in NCPPB382 could be found in the chromosome or in plasmids other than pCM1. This study contributes to a better understanding of the diversity of Cmm genetic profiles and virulence of strains present in Argentina. Such information could be useful for the selection of strains for screening of host resistance and development of resistant tomato varieties.
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