Under the normal conditions of in vitro RNA synthesis, the virion-associated RNA polymerase of vesicular stomatitis virus synthesizes five monocristronic mRNAs and a 48-nucleotide-long leader RNA that represents the exact 3'-terminal region of the genome RNA [Colpnno, R. J. & Banerjee, A. K. (1978) Cell, 15, 93-101]. When the transcribing core was preincubated with ATP and CTP, reisolated, and then incubated in the presence of the fty imido analoguq of ATP (AdoPFIINMI) and the three normal ribonucleoside. triphosphates, the fulllength complementary strand of the getlotne RNA was synthesized in vitro. The results suggest that specific phosphorylated states of regulatory proteins may control transcription in vitro to generate the full-length plus strands.The virion-associated RNA polymerase of vesicular stomatitis virus (VSV) transcribes the singlestranded genome RNA of negative polarity in vitro into five"mbnocistronic mRNA species(1, 2). The transcription process appears to be sequential, with the synthesis of a "leader RNA" representing the 3'-terminal 48-nucleotide region of the genome RNA (3) followed by the synthesis of the mRNA species coding for the structural proteins in the order N, NS, M, G, and L (4,5). The sum of the molecular weights of the mRNA species approximately corresponds to the total coding potential of the genome RNA, indicating that the entire genome is transcribed in vitro (2). However, the complete complement of the negative-strand genome RNA (the 42S plus strand), which is the required intermediate of replication, has not been detected in vitro although it has been identified in the infected cell (6, 7). Thus, it appears that transcription of the full-length VSV genome RNA in vitro possibly requires modified experimental conditions or mediation by host or intracellular viral proteins (8,9).We have recently shown that ATP plays a significant role during initiation of VSV mRNA synthesis in vitro (10). The apparent Km for ATP during the initiation step was significantly higher (0.5 mM) than that observed for the same nucleotide during the period of chain elongation (25MuM). These results coupled with the observation that the first RNA'product, the leader RNA, terminates with a 5'-terminal diphosphate ppA-C-G sequence (3) suggested that the removal of the y-phosphate of ATP may be directly involved in the initiation step of RNA synthesis. This MATERIALS AND METHODS Purification of VSV. VSV (Indiana serotype) was grown in baby hamster kidney cells (BHK-21, clone 13) adapted to suspension culture and purified as described (11).Conditions for In Vitro Synthesis of Full-Length Positive Strand. Purified VSV (1.6 mg) was disrupted with Triton N-101 (0.05%) in 0.05 M Tris-HCl, pH 8/0.1 M NaCl/5 mM MgCl2/4 mM dithiothreitol/I mM ATP/0.5 mM CTP (total volume, 2 ml). The mixture was incubated for 30 min at 30'C. The reaction mixture was then chilled to 40C and layered onto 2 ml of solution containing 20% (wt/vol) glycerol in 0.01 M Tris.HCl, pH 7.4/0.01 M KCI/0.1 mM MgCl2/0.1 M NaCl/1 m...