19The births of more than 8 million infants have been enabled globally through assisted 20 reproductive technologies (ARTs), including conventional in vitro fertilization (IVF) and 21 intracytoplasmic sperm injection (ICSI) with either fresh embryo transfer (ET) or frozen embryo 22 transfer (FET). However, the potential for elevated risks of ART-related disorders persists in adult 23 life, and the underlying epigenetic mechanisms are largely uncharacterized. Here, we recruited 100 24 nuclear families and profiled the DNA methylomes, genome-wide histone modifications and 25 transcriptomes to clarify the inherent extra risks attributable to specific ART procedures. We 26 discovered that IVF-ET seemed to introduce less disturbance into the infant epigenome than IVF-27 FET or ICSI-ET did. Furthermore, we noted approximately half of the DNA methylomic changes 28 in ART-conceived offspring could be explained by parental background biases. Through removal 29 of the parental effect, we confirmed that ART per se would introduce minor DNA methylation 30 changes locally. More importantly, we found that ART-induced epigenomic alterations were highly 31 enriched in the processes which might contribute to increased incidence of preeclampsia during 32 pregnancy and metabolic syndrome in offspring. Overall, our study provides an epigenetic basis 33 for the potential long-term health risks in ART-conceived offspring that reinforces the need to 34 review all methods of human ART.
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Introduction
36Assisted reproductive technology (ART) has become routine in infertile treatment; indeed, 37 more than eight million ART-conceived infants have been born worldwide 1 . However, 38 conventional in vitro fertilization and fresh embryo transfer (IVF-ET) will introduce extraordinary 39 changes in the environment where oocytes mature and the early embryo develops 2 . Moreover, 40 intracytoplasmic sperm injection (ICSI), which was initially used to address severe male infertility, 41 has replaced IVF as the most commonly used method for ART-mediated fertilization in many 42 countries 3 . This more invasive fertilization procedure introduces additional mechanical damage, 43 bypasses the complicated process of sperm-egg recognition and alters a series of downstream 44 reactions 4 . Embryo cryopreservation enables embryos to be preserved for further transplantation, 45 but both cryogens and freeze-thawing operation may cause damage to embryos 5 . All those 46 unfavorable factors have raised concerns regarding the long-term health of ART-conceived 47 children in recent years 6 . Despite claims to the contrary 7-9 , accumulating evidences have linked 48 ART with potentially increased risks of neurodevelopmental disorders, cardiovascular dysfunction 49 and metabolic abnormity in offspring and preeclampsia during pregnancy 10,11 . 50 Epigenetic modifications, such as DNA methylation and histone modifications, play key roles 51 in regulating gene expression and are relatively sensitive to environmental factors 12 . 52 Preimplantation embry...