Bacillus subtilis cells harvested 3.5 h after the onset of sporulation (t3.5) were fractionated into extracts enriched in either mother cell or forespore components and were analyzed immunologically for ffE and its precursor protein, P3. We determined by Western blot (immunoblot) analysis that equivalent amounts of p3l and CJE were present in both mother cell and forespore extracts. This result implies that, although C.E is not synthesized until a stage in development when the cell is partitioned into progenitor forespore and mother cell compartments, it probably directs the transcription of genes that are expressed in both of these structures.Endospore formation by Bacillus subtilis is a simple developmental process that requires the activation of sporulation-specific genes in a precise temporal sequence. Although the mechanism by which sporulation genes are properly expressed is still unclear, novel RNA polymerase sigma factors are believed to be important elements of spore gene transcription (12). At least four sporulation-essential genes (sigH, spoIIAC, sigE, and spoIIIG) encode sigma-like proteins (2, 4,6,10,17,19 Conf., abstr. 28). UE, the sigE gene product, is the best characterized of these proteins. One of the more intriguing aspects of 'E iS its complex and highly regulated mode of synthesis.Synthesis of CuE iS controlled both at the level of transcription and by a posttranslational modification of the sigE gene product (9, 11). The primary translation product of sigE is not the sigma factor itself but rather an inactive precursor protein (P") (20). P31 is processed into SE by the removal of 29 amino acids from the P" amino terminus (11). This reaction is catalyzed by a developmentally regulated proteolytic activity which is first detected in B. subtilis between 1 h (t1) and 2 h (t2) into sporulation (11,21). The stage of development at which the processing of P31 occurs corresponds to that period during which the forespore septum is synthesized (1). This structure partitions the developing cell into progenitor mother cell and forespore compartments. It had previously been reported that a sporulation-specific RNA polymerase subunit (81), which is probably identical to UE, is selectively associated with the RNA polymerase fraction that can be extracted from forespores but not from mother cells (13). If this is true, then it is possible that the coincidence of P3" processing with the formation of the spore septum is a consequence of a forespore-specific activity that only appears once compartmentalization occurs. Assuming that this notion is true, we would anticipate that P31, whose synthesis begins before septation occurs, would be present in both mother cell and forespore compartments, while a.E would be present only in the forespore fraction. To test this possibility, we separated sporulating B. subtilis into mother * Corresponding author. cell and forespore fractions and then assayed the resulting extracts for the presence of p31 and UE in a Western blot (immunoblot) assay.B. subtilis SMY was grown i...