Processing of large amount of data for high energy physics experiments is modeled here in a form of a multichannel, distributed measurement system based on photonic and electrical modules. A method to control such a system is presented in this paper. This method is based on a new method of address space management called the Component Internal Interface (CII). An updatable and configurable environment provided by FPGA fulfills technological and functional demands imposed on complex measurement systems of the considered kind. A purpose, design process and realization of the object oriented software application, written in the high level code described. A few examples of usage of the suggested application is presented. The application is intended for usage in HEP experiments and FLASH, XFEL lasers.