Using a monoclonal antibody that recognizes a nuclear matrix protein, we selected a cDNA clone from a gt11 human placenta cDNA library. This cDNA encoded a 939-amino acid protein designated nuclear matrix protein NXP-2. Northern blot analysis indicated that NXP-2 was expressed in various tissues at different levels. Forcibly expressed green fluorescent protein-tagged NXP-2 as well as endogenous NXP-2 was localized in the nucleus and distributed to the nuclear matrix. NXP-2 was released from the nuclear matrix when RNase A was included in the buffer for nuclear matrix preparation. Mapping of functional domains was carried out using green fluorescent protein-tagged truncated mutants of NXP-2. The region of amino acids 326 -353 was responsible for nuclear matrix binding and contained a cluster of hydrophobic amino acids that was similar to the nuclear matrix targeting signal of acute myeloleukemia protein. The central region (amino acids 500 -591) was demonstrated to be required for RNA binding by Northwestern analysis, although NXP-2 lacked a known RNA binding motif. The region of amino acid residues 682-876 was predicted to have a coiled-coil structure. The RNA-binding, nuclear matrix-binding, and coiled-coil domains are structurally separated, suggesting that NXP-2 plays important roles in diverse nuclear functions, including RNA metabolism and maintenance of nuclear architecture.The nuclear matrix is involved in the structural organization of chromatin and the integrity of the nucleus (1-3). In addition, DNA replication, RNA processing, and gene transcription have been suggested to be associated with the nuclear matrix. There are many reports of chromatin binding to the nuclear matrix during replication (4 -10), as well as the enrichment of transcribed genes in this nuclear subcompartment (11-15). The DNA-nuclear matrix interaction seems to be mediated by chromatin-associated proteins such as topoisomerase II (3), matrixassociated region-binding proteins such as hnRNPU (16), and SATB1 (17). These proteins are capable of binding to A/T-rich DNA regions (3,16,17). It was reported that the hSWI/SNF protein complex involved in the remodeling of chromatin during gene activation could be associated with the nuclear matrix attachment region (18). The nuclear matrix may act as an active structure on which gene expression takes place (for review, see Ref. 9). On the basis of experimental observations, it has been suggested that actively transcribing nucleotideprotein complex is associated with the nuclear matrix (7, 19 -22) and that posttranscriptional processing of nascent transcripts takes place in association with the nuclear matrix (23, 24). Recently, protein mass spectrometry of the interchromatin granule, a subfraction of the nuclear matrix, identified many RNA-binding proteins involved in RNA processing (25).These results suggest that the nuclear matrix constitutes various dynamic nuclear substructures involved in diverse nuclear functions. To clarify the functional roles of the nuclear matrix, more protein comp...