How well does the functional MRI (fMRI) signal reflect underlying electrophysiology? Despite the ubiquity of the technique, this question has yet to be adequately answered. Therefore, we have compared cortical maps generated based on the indirect blood oxygenation level-dependent signal of fMRI with maps from microelectrode recording techniques, which directly measure neural activity. Identical somatosensory stimuli were used in both sets of experiments in the same anesthetized macaque monkeys. Our results demonstrate that fMRI can be used to determine the topographic organization of cortical fields with 55% concordance to electrophysiological maps. The variance in the location of fMRI activation was greatest in the plane perpendicular to local vessels. An appreciation of the limitations of fMRI improves our ability to use it effectively to study cortical organization. U ntil recently, noninvasive techniques used to image the human brain and its activity were not widely accessible. However, in the past few years, procedures such as functional MRI (fMRI) have become readily available and are used in a wide range of disciplines including Radiology, Psychology, Psychiatry, Neurology, Neurosurgery, and Neuroscience. The investigations undertaken by different groups are diverse and range in scope from understanding complex perceptual and cognitive processes to examining the activity patterns generated from simple sensory stimuli. However, a basic question that has yet to be addressed is: how accurately do changes in the vascular system reflect changes in neural activity (1)?Despite the ubiquity of the technique and the number of inferences that have been made based on its use, there have been few studies that focus on the relationship between the blood oxygenation level-dependent (BOLD; ref.2) signal of fMRI and the underlying neural activity that it is assumed to reflect. Typically, fMRI is based on the hemodynamic response to evoked neural activity. The BOLD signal is derived from the oxygenation state of local hemoglobin. Neural activity requires oxygen, which triggers an increase in local oxy-hemoglobin, resulting in an increase in signal intensity in an active region of cortex (3). Thus, the BOLD signal is an indirect indicator of neural activity with unknown accuracy.Appreciating the link between fMRI and neurophysiology is important not only for the use and interpretation of fMRI, but also when comparing data from humans with the wealth of data gathered using invasive techniques in monkey cortex. The macaque monkey is the most widely studied animal model for human neocortical organization and function. The ability to compare human data directly with an animal model will allow us to extend our understanding of complex human behavior based on detailed neurophysiological and neuroanatomical data from the macaque monkey.We have, therefore, developed a monkey model appropriate for the study of the relationship between the fMRI BOLD signal and the underlying neural activity. We have examined the BOLD response and th...