The present work describes a new, simple and easy method for the generation of novel molecularly imprinted polymer-based nanoarrays with uracil and 5-fluorouracil as template(s) on the surface of silver electrode. The procedure involved an electrochemical etching of silver-wire to develop nanopores on its tip. In these nanopores, a prepolymer mixture with template(s) was filled-in via spin coating and subjected to the free radical thermal polymerization. The bulk polymer and polymer film characteristics were investigated using Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, scanning electron microscopy, and atomic force microscopy. The prepolymerization complex stoichiometry involved one template molecule and two molecules of the N-acryloyl-2mercaptobenzamide functional monomer. Molecular structure of this complex was thermodynamically optimized via density functional theory at MP2/6-31+G (d, p) level. The nanoarrays, vertically tethered imprinted polymer brush with embedded carbon nanotubes, helped enhancing surface area of the electrode. This drastically facilitated unhindered vertical diffusion with selective binding of uracil and 5-fluorouracil and their sensitive analysis using differential pulse anodic stripping voltammetry, with detection limits as low as 0.50 and 0.33 ng mL -1 (S/N=3), respectively. The proposed nanoscale electro-chemical sensor was also validated with the complex matrices of blood plasma and pharmaceutics which assured reliable results, without any matrix effect, cross-reactivity, and false-positives. The large therapeutic range of test analyte (uracil 1.49-278.76 ng mL -1 , 5-fluorouracil 1.33-401.15 ng mL -1 ), demonstrating a perfect linearity (R 2 = 0.98) with the improved voltammetric response, merits special significance for the primitive diagnosis of several chronic diseases, in clinical settings, without any sample pretreatment. 4 anodized at an optimized low electrical voltage to develop small-bore nanopores. These nanopores were subsequently filled with a prepolymerization mixture [N-acryloyl-2-mercaptobenzamide (functional monomer), Ura or 5-FU (template), ethylene glycol dimethacrylate (cross-linker), azobisisobutyronitrile (AIBN, initiator), and MWCNTs] and subjected to the thermal polymerization.The Ag membrane around MIP nanopores was then removed by chemical dissolution, leaving behind MIP-nanoarrays with template molecule binding sites situated at the surface. This allowed π-π electronic interactions between MWCNTs and aromatic precursors (monomer and template) and selfassembled hydrogen bonded monomer-template complex confined within the nano arrays that provide an unique environment of homogeneously distributed recognition sites to promote sensitivity.