In, this study, we analysed the effects of thinning on stand structure and carbon stocks for a mixed conifer and broadleaf natural secondary forests in the Small Khingan Mountains, China. Stand structure and carbon stocks were assessed in trees from unthinned control (CK), lightly thinned (LT), moderately thinned (MT) and heavily thinned (HT) treatments. Results showed that the heavier the thinning, the larger the crown area became. Under the MT treatment, trees tended to be evenly distributed when compared to trees under the other treatments. All the trees of the LT and HT treatments were mixed strongly compared to those of the CK treatment. As the thinning intensitiy increased, the distributions of size differentiation and crowding degree gradually decreased. As a result, the competitive pressure diminished, and more dominant trees emerged. In addition, there was a significant positive correlation between individual tree carbon stock and canopy under all treatments. Carbon tends to accumulate in individuals with a random distribution, sparse spacing, strong mingling index and large competitive advantage. However, the results varied slightly under the HT treatment. Individuals in a dominant position occupied abundant resources and great niche space.