An antibody against the Escherichia coliexpressed RNA polymerase of foot-and-mouth disease virus (FMDV) reacts with the virus in ELISA and radioimmunoprecipitation experiments and with a protein of the disrupted virus particle in an immunoblot analysis. Treatment of the virus with trypsin, which cleaves capsid protein VP1 and a 56-kDa polypeptide present in trace amount in the particles, reduces the level of the reaction in ELISA and radioimmunoprecipitation and eliminates the immunoblot reaction. Electron microscopy showed that only --20% of the virus particles reacted with the anti-polymerase antibody, whereas most reacted with an antibody against the immunodominant G-H loop of the virus. In the presence of ammonium ions, the expressed polymerase degrades the RNA of the virus into molecules sedimenting at "'12 S, indicating that it can act as a hydrolytic as well as a polymeriznng enzyme. Moreover, the RNA in trypsin-treated virus particles is degraded when incubated at 3rC, suggesting that the cleaved 56-kDa protein still possesses hydrolytic activity. In addition, the anti-polymerase antibody, which inhibits the polymerase activity of the E. col-expressed protein, also partially inhibits the hydrolytic activity of the previously described endonuclease of the virus particle, suggesting that this enzyme is identical with the polymerase or forms part of it.Although it is generally accepted that picornaviruses consist of one molecule of positive-sense single-stranded RNA of -2600 kDa, the four capsid proteins VP1-VP4 (each present in 60 copies), and one or two copies of VP0 (the precursor of VP4 and VP2), traces of other proteins of 40 kDa and 56 kDa have been found consistently in highly purified particles of foot-and-mouth disease virus (FMDV) (1, 2). J.F.E.N. (unpublished observation) has also found traces of proteins of similar size in poliovirus particles. The 56-kDa protein in FMDV is phosphorylated (3) and, with one of the two proteins of 40 kDa, is cleaved by treating the particles with trypsin (2). With the exception of VPO (40 kDa), to our knowledge, the identity of these minor polypeptides has not been established with certainty. Biochemical mapping indicated that in addition to VP0 a second protein of 40 kDa was present. This protein was encoded downstream of the capsid proteins (2), and the 56-kDa protein was considered to be the virus-infection-associated (VIA) antigen (the viral RNA polymerase; refs. 4 and 5) on the basis of its molecular mass and its reaction with serum from convalescent and vaccinated animals.Because of their failure to detect antibody to the VIA antigen in the sera of vaccinated animals, in contrast to its presence in convalescent sera, Cowan and Graves (4) concluded that its presence was associated with infection. However, recent work has demonstrated (6-8) the presence ofThe publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. §1734 solely to indicate t...