One of the central problems in ecology is to understand how patterns observed in ecological systems are linked to ecological and evolutionary processes (Levin 1992). Ecological systems -as biological systems in general -are examples of what Warren Weaver called, almost 70 years ago, "problems of organized complexity", in which systems are characterized by a sizable number of interrelated elements (Weaver 1948). In the last decades, the problems of organized complexity in different scientific fields have been tackled by depicting systems as networks (Amaral and Ottino 2004). In this approach, ecological systems are characterized as networks composed of co-occurring or interacting elements, and the ecological patterns quantified in terms of network structures. Subsequently a suite of approaches is used to infer the underlying processes shaping network structures and/or to explore the consequences of network structures for the way ecological systems respond to different external factors. The characterization of ecological systems as networks is not new, as illustrated by the seminal work by Cohen, Margalef, May, Odum, Paine and others. However, in the last years the use of networks in ecology has rapidly expanded from more traditional descriptions of food webs to the characterization of a wide range of ecological systems as illustrated by this Oikos special issue. These studies collectively explore the workings of processes that shape networks and the functional consequences of network organization of ecological systems.The notion that network structures in ecological systems inform about the ecological and evolutionary processes is rooted in the intuition that "complex systems must display some organizing principles, which should be at some level encoded in their topology" (Albert and Barabási 2002). In ecological systems, interactions always occur at individual level and, therefore, processes shaping ecological networks are ultimately processes affecting how individuals of different species interact with each other. The most basic aspects affecting interactions among individuals are time and space. For example, Valverde et al. 2016 studied the overlap in the pollinator assemblages of the animal-pollinated plant Erysimum mediohispanicum (Brassicaceae), showing that variation in the phenology of individuals of E. mediohispanicum partially explain the strong temporal variation in the patterns of pollinator overlap among individuals. Other ecological interactions occur in very localized spatial scales. For example, Encinas-Viso et al. ( 2016) show that a combination of spatial organization and stochasticity is sufficient to reproduce much of the organization of co-occurrence networks formed by plants and their associated mycorrhizal fungi. On the other hand, the motif analysis performed by Baiser et al. (2016) supports the notion that the organization of more localized food webs in space reflects, to a great extent, the organization of food webs at larger spatial scales.In addition to temporal and spatial scales, intr...