SynopsisThe fish assemblage in nineteen shallow water (0-3 m) areas on the Swedish west coast, including an estuarine zone, was assessed during spring and autumn 1989 and autumn 1990, using semi-quantitative survey nets. Samples of macrovegetation were collected concurrently for estimates of species composition and biomass .Nine stations had rocky-bottom substrata and ten had soft-bottom substrata all characterized by high coverage of macrovegetation and variously overgrown with epiphytic filamentous algae . Fish assemblage structures were compared and related to vegetation biomass, substrata and estuarine influences . At rocky-bottom stations total fish biomass was positively correlated with total vegetation biomass and negatively correlated with the proportion of filamentous algae during autumn samplings . In soft-bottom habitats variation in vegetation was small between stations, and no correlation existed between vegetation biomass and fish biomass .However, the number of fish species in soft-bottom habitats decreased significantly with increasing dominance of filamentous algae . The component species of the fish assemblage varied in their relation to the vegetation biomass and structure suggesting differences in degree of association with vegetation at the species level . Multivariate analysis based on fish species composition and on vegetation assemblages at the individual stations, yielded two major groups in accordance with division of the substrate into rocky-and soft-bottom habitats . Vegetation biomass superimposed on the fish assemblage ordination indicated a relationship between vegetation biomass and fish assemblage structure . Location of stations, in relation to the estuary was reflected in subgroups formed in the fish assemblage based cluster and ordination, suggesting a substantial estuarine influence on the fish assemblages . Thus, substrate type, vegetation biomass and structure, and estuarine influence are all potential structuring factors for the fish assemblages . In our study, vegetation structure s eems . t o be of major importance and changes such as increased dominance of filamentous algae, like that observed in coastal areas in Sweden, might cause significant changes in fish assemblage structure .