Multidrug transporters pump structurally dissimilar toxic molecules out of cells. It is not known, however, if detoxification is the primary physiological function of these transporters. The chromosomal organization of the gene encoding the Bacillus subtilis multidrug transporter Blt suggests a specific function for this protein; it forms a single operon with another gene, bltD, whose protein product is identified here as a spermine/spermidine acetyltransferase, an enzyme catalyzing a key step in spermidine degradation. Overexpression of the Blt transporter in B. subtilis leads not only to the multidrug-resistance phenotype but also to the efflux of large amounts of spermidine into the medium; this efflux is supressed by an inhibitor of Blt, reserpine. Taken together, these results strongly suggest that the natural function of the Blt transporter is the efflux of spermidine, whereas multiple drugs may be recognized by Blt merely opportunistically.Multidrug transporters, first discovered in mammalian cells (P-glycoprotein) (1) and later found in yeast (2) and many species of bacteria (3-5), pump structurally dissimilar toxic molecules, including many anticancer, antifungal, and antibacterial agents, out of cells. The ability of each multidrug transporter to recognize dozens of compounds that have no apparent structural consensus seemingly contradicts basic dogmas of biochemistry and remains enigmatic.Another unresolved question associated with multidrug transporters concerns their normal physiological functions. Because overexpression of these proteins causes an increase in cellular resistance to toxins, it is commonly believed that they have evolved to protect cells from diverse environmental toxic molecules. It is possible, however, that each multidrug transporter has a specific, presently unidentified natural substrate, e.g. some cellular metabolite, whereas multiple drugs are effluxed by them merely opportunistically. This latter hypothesis is indirectly supported by the analysis of the primary structures of multidrug transporters. More than two dozen known transporters capable of effluxing multiple drugs share no common sequence motif and belong to at least four distinct superfamilies of membrane proteins (1-5). Furthermore, many multidrug transporters display strong homology to substrate-specific transporters. For example, human P-glycoprotein, the product of the MDR1 gene, is highly homologous to the protein MDR2, which does not efflux drugs but is a specific phosphatidylcholine flippase (6). Similarly, the bacterial multidrug transporters Bmr and Blt of Bacillus subtilis and NorA of Staphylococcus aureus are highly homologous to the efflux transporters whose only known substrate is tetracycline (7-10).It has recently been demonstrated that P-glycoprotein transports not only drugs but also structurally diverse natural lipids across the membrane (11). Here we demonstrate that the activity of the B. subtilis multidrug transporter Blt leads to the efflux of a natural cellular constituent, the polyamine spermi...