Cryptochrome (CRY) is a blue-light sensitive flavoprotein that functions as the primary circadian photoreceptor in Drosophila melanogaster. The mechanism by which it transmits the light signal to the core clock circuitry is not known. We conducted in vitro studies on the light-induced conformational change in CRY and its effect on protein-protein interaction and performed in vivo analysis of the lifetime of the signaling state of the protein to gain some insight into the mechanism of phototransduction. We find that exposure of CRY to blue light induces a conformation similar to that of the constitutively active CRY mutant with a C-terminal deletion (CRYΔ). This light-induced conformation has a half-life of ∼15 min in the dark at 25°C and is characterized by increased affinity to Jetlag E3 ligase. In vivo analysis reveals that in the Drosophila S2 cell line, the signaling state induced by a millisecond light exposure has a half-life of 27 min in the dark at 0°C during which period it is susceptible to degradation by the ubiquitin-proteasome system. These findings lead to a plausible model for circadian photoreception/ phototransduction in Drosophila.circadian clock | photocycle | proteolysis | sensory flavoprotein C ryptochrome (CRY) is a flavoprotein that regulates growth and development in plants in response to blue light, functions as a circadian photoreceptor in Drosophila and other insects, and acts as a core component of the molecular clock in mammalian organisms (1-4). Despite extensive research on CRYs photosensory function in Arabidopsis and Drosophila, its mechanism of photoreception/phototransduction is poorly understood. Even the redox status of the FAD cofactor is a matter of some debate (5-8). In the phylogenetically related protein, DNA photolyase, photoinduced cyclic electron transfer from the FADH − cofactor to a pyrimidine photodimer repairs the DNA damage and regenerates the FADH − for new rounds of catalysis (9-11). However, there is no evidence so far for a similar reaction in either Arabidopsis CRY1 (AtCRY1) and CRY2 or Drosophila CRY, which at present are the most extensively studied CRYs. The lack of evidence for a cyclic redox reaction in CRYs has led to consideration of the mechanisms of other photosensory flavoproteins as potential models for CRYs in general and Drosophila CRY in particular.Currently, three types of photosensory flavoproteins are known (12): the photolyase/CRY family, the LOV domain proteins such as phototropin, and the BLUF domain proteins such as the photoactivated adenylyl cyclase. Whereas photolyase, as noted above, carries out catalysis by light-induced cyclic electron transfer, LOV and BLUF domain proteins initiate photosignaling by a lightinduced conformational change. Failing to obtain any evidence for CRY signaling by a photolyase-like mechanism, we considered the possibility that CRY also may carry out its light signaling by a light-induced conformational change that would affect the interaction of CRY with downstream signal transduction partners (13,14). Inde...