First Report of Anthracnose on Pecan (Carya illinoinensis) Caused by Colletotrichum siamense in Korea

Abstract

In 2020, severely infected fruit of pecan, Carya illinoiensis, showing distinct anthracnose symptoms were observed from pecan orchards in Uiseong (36°21'31.5"N 128°27'15.9"E) and Miryang (35°22'54.9"N 128°48'06.5"E) in South Korea. Visible symptoms occurred on fruit of the tree between June and July, which included dark, depressed and covered with irregularly shaped lesions. As the disease progressed, the lesions expanded and merged over time, leading to abscission of the fruit, which resulted in severe yield loss of pecan fruit. Of pecan varieties including Caddo, Giles and Peruque that were cultivated in each pecan orchard, Caddo appeared to be most susceptible to the disease. Estimated losses were approximately 30% and 70% for the Uiseong and Miryang pecan orchard, respectively. For pathogen isolation, ten symptomatic fruits of pecan were randomly collected and brought to the laboratory. The fruits were surface disinfested for 30 s with 70% ethanol and 1% sodium hypochlorite. These were then rinsed with sterile distilled water twice, placed in a humid chamber, and incubated at 25 ± 1°C with a photoperiod of 12 h. Acervuli filled with salmon-colored conidial masses were produced abundantly on the fruit a day after the incubation. Conidia were single celled, hyaline, cylindrical having rounded ends, smooth walls, guttulate, 15.5 to 17.7 µm long, and 3.4 to 4.8 µm wide (n = 20). Monoconidial isolates were made on 2% malt extract agar and incubated at 25°Ϲ for two weeks in the dark condition. Of those that were successfully retained, two representative isolates from each orchard were deposited in the culture collection (CDH) of the National Institute of Forest Science, Korea (Accession No. CDH2020-17–18). To ensure the identity of the pathogen, molecular identification was made based on three gene regions, the internal transcribed spacer (ITS) region of rDNA, beta-tubulin (TUB2) gene and a partial sequence of the actin (ACT), which were amplified with ITS1F/ITS4, T1/Bt2b and ACT-512F/ACT-783R, respectively (Weir et al. 2012). These were then submitted to GenBank with accession numbers of MW380423–24 for ITS, MW387129–30 for TUB2 and MW387127–28 for ACT. A BLAST search in GenBank revealed that the sequences showed high similarity to those of Colletotrichum siamense, which were identical to MT434615 and MT274214 for ITS and ACT, respectively, and 99.7% to MK967337 for TUB2. Phylogenetic analysis based on the maximum likelihood method further showed that the isolates recovered in this study clustered with C. siamense, confirming its identity. Pathogenicity was confirmed by inoculating living pecan trees. Healthy fruits from five trees were surface cleaned with cotton soaked in sterile water and air-dried. To inoculate the pathogen, three to five fruit per tree were wounded with a sterilized needle, and an aliquot of 10 μl of spore suspension (1.0 × 105 conidia/ml) of C. siamense (CDH2020-18) was dropped on each wound. To keep moisture, each treated fruit was enveloped by a plastic bag where the cotton soaked in sterile water had been placed. Controls were treated with sterile distilled water drops. The symptoms with dark, depressed and irregularly shaped lesions developed from all inoculated treatments six weeks after the inoculations, which were identical to those observed in the field. However, no symptom was observed on the control. Colletotrichum siamense was successfully re-isolated, fulfilling Koch’s postulates. Taken together, it was confirmed that C. siamense is the causal agent of anthracnose on pecan. In Korea, C. siamense was reported causing anthracnose on apple, persimmon and plum (Farr and Rossman 2020). However, to our knowledge, this is the first report of anthracnose on pecan caused by C. siamense in Korea. To control the disease effectively, more attention should be paid to other regions of the country where the disease caused by the pathogen might occur.

Complete Mitochondrial Genome Sequence of Colletotrichum siamense Isolated in South Korea

“…In 2020, severely infected fruit of pecan, Carya illinoinensis (Wangenh.) K. Koch, showing distinct anthracnose symptoms was observed in pecan orchards in Uiseong (36°21′31.5″N, 128°27′15.9″E) and Miryang (35°22′54.9″N, 128°48′06.5″E) in South Korea, and the causal agent of anthracnose on pecan was identified as Colletotrichum siamense Prihastuti, L. Cai & K. D. Hyde 2009 ( 3 ).…”

“…KACC 49782), was obtained from the culture collection (Cultures of Dong-Hyeon) of the National Institute of Forest Science, South Korea ( https://nifos.forest.go.kr ) (accession no. CDH2020-20) ( 3 ). Genomic DNA was extracted from the mycelium using Maxwell 16 DNA purification kits (Promega, USA).…”

Identification and characterization of Colletotrichum fioriniae and C. fructicola that cause anthracnose in pecan

“…Light yellow spots appear first, which enlarge and finally develop into irregularly shaped lesions with a chlorotic halo (Zhang et al, 2019). Visible symptoms of shuck include darkening, indentations, and irregularly shaped lesions (Oh et al, 2021).…”

“…Subsequently, three Colletotrichum spp. were established to infect pecan: C. gloeosporioides , C. siamense , and C. nymphaeae ( Mantz et al., 2010 ; Poletto et al., 2019 ; Zhang et al., 2019 ; Oh et al., 2021 ).…”

“…Light yellow spots appear first, which enlarge and finally develop into irregularly shaped lesions with a chlorotic halo ( Zhang et al., 2019 ). Visible symptoms of shuck include darkening, indentations, and irregularly shaped lesions ( Oh et al., 2021 ). Other symptoms consist of circular lesions of up to 5 mm with clearly delineated or cracked centers, dark brown margins, and a yellowish halo on the leaves ( Poletto et al., 2019 ).…”