On-line, continuous chemiluminescence detection has been recently applied to gravitational field-flow fractionation as a new method suitable for flow-assisted assays based on the separation between the analyte in solution and the analyte bound to micrometer-sized particles. In this work, flow field-flow fractionation coupled with offline chemiluminescence detection is exploited for the development of flow-assisted, multianalyte assays. Micrometer-sized, polystyrene beads coated with enzymes suitable for chemiluminescence detection, such as horseradish peroxidase and alkaline phosphatase, are used as model samples. The high size-based selectivity of flow field-flow fractionation and specificity of chemiluminescence detection make possible, in a single run with very short analysis time, the simultaneous, high sensitivity detection of the different enzymes linked to beads of different size.