Single-chain urokinase-type plasminogen activator (scu-PA) can be cleaved by thrombin into a virtually inactive form called thrombin-cleaved two-chain urokinase-type plasminogen activator (tcu-PA/T), a process accelerated by thrombomodulin, which contains six epidermal growth factor (EGF)-like domains. In this study, we identified the EGFlike domains of thrombomodulin required for the acceleration of the inactivation of scu-PA by thrombin using various forms of thrombomodulin (TM). scu-PA was treated with thrombin in the absence and presence of full-length rabbit TM (containing EGF1-6), recombinant TM comprising all of the extracellular domains including EGF1-6 (TM LEO ) and recombinant TM comprising EGF4-6 plus the interconnecting region between EGF3 and EGF4 (TM E i4-6), and the tcu-PA/T generated was quantitated in each case. Rabbit TM accelerated the inactivation of scu-PA < 35-fold, while both recombinant forms accelerated it only threefold due to the absence of a critical chondroitin sulfate moiety. Subsequently, TM E 5-6 was prepared by cyanogen bromide digestion of TM E i4-6. TM E 5-6 bound to thrombin but did not accelerate the activation of protein C. In contrast, the inactivation of scu-PA by thrombin was accelerated to the same extent as that induced by TM LEO and TM E i4-6. This study demonstrates that, in addition to the chondroitin sulfate moiety, only EGF-like domains 5 and 6 are essential for the acceleration of the inactivation of scu-PA by thrombin. This differs from the domains that are critical for activation of protein C (EGF-like domains i4 -6) and thrombin activatable fibrinolysis inhibitor (EGF-like domains 3-6).Keywords: single-chain urokinase-type plasminogen activator; thrombin; inactivation; thrombomodulin; epidermal growth factor-like domains.Single-chain urokinase-type plasminogen activator (scu-PA) is the precursor form of two-chain urokinase-type plasminogen activator (tcu-PA), which plays a role in fibrinolysis and extracellular proteolysis by converting plasminogen into plasmin [1]. Activation of scu-PA into tcu-PA occurs after cleavage at Lys158 -Ile159 by plasmin or other activators. Cleavage of scu-PA at another site can result in inactivation. Thrombin cleaves scu-PA at Arg156 -Phe157, two residues prior to the activation site, in this way generating an inactivated tcu-PA form called thrombincleaved tcu-PA (tcu-PA/T) [2]. In vitro, tcu-PA/T appears to have little amidolytic and fibrinolytic activity [2,3]. However, in a rabbit jugular vein thrombosis model, tcu-PA/T was found to be a potent and fibrin-specific thrombolytic agent [4,5], which may be explained by re-activation of tcu-PA/T by dipeptidyl peptidase I (cathepsin C) and by platelets [6,7], or by the promoting effect of fibrin fragment E-2 on plasminogen activation by tcu-PA/T [8]. The inactivation of scu-PA has been postulated as a mechanism for protecting a fresh blood clot from early fibrinolysis [3,9]. The inactivation does indeed take place in vivo, as we have demonstrated the presence of tcu-PA/T in human bod...