Fatty acid synthase (FAS; EC 2.3.1.85) was purified to near homogeneity from a human hepatoma cell line, HepG2. The HepG2 FAS has a specific activity of 600 nmol of NADPH oxidized per min per mg, which is about half that of chicken liver FAS. All the partial activities of human FAS are comparable to those of other animal FASs, except for the 13-ketoacyl synthase, whose significantly lower activity is attributable to the low 4'-phosphopantetheine content of HepG2 FAS. We cloned the human brain FAS cDNA. The synthesis of long-chain fatty acids from acetyl-CoA, malonyl-CoA, and NADPH is a complex process catalyzed by the fatty acid synthase (FAS). In animal tissues, the active synthase is a homodimer of a multifunctional protein that is organized in a head-to-tail fashion, generating two active catalytic centers (1). The seven partial activities and the site for the prosthetic group, 4'-phosphopantetheine (acyl carrier protein), are arranged on the multifunctional protein subunit from the amino to carboxyl termini in the following order: f3-ketoacyl synthase, acetyl-CoA and malonyl-CoA transacylases, dehydratase, enoyl reductase, ketoacyl reductase, acyl carrier protein, and thioesterase (1). Most information about the synthase is derived from nonhuman animal studies, so little is known about the human synthase. Investigators who isolated the enzyme from human biopsy tissues (2-5) or cell lines (6) have shown that, except for the enzyme from the SKBR3 cell line (6), all the human FAS preparations had lower activity than the FASs of other animals. This lower activity of the human FAS is comparable to the activities of related human enzymes that are involved in lipogenesis (e.g., pyruvate dehydrogenase, citrate lyase, and glucose-6-phosphate dehydrogenase), which are lower (by a factor of 4-7) in human tissues than in other animal tissues, implying that lipogenesis in humans is highly repressed (7-9).Here we describe the purification and catalytic properties of Assays of FAS and Its Partial Activities. The synthase activity was assayed by measuring the rate of oxidation of NADPH or the incorporation of radiolabeled acetyl-CoA or malonyl-CoA into palmitate (10). The partial activities of FAS were assayed as described earlier: the acetyl/malonyl transacylases (11), dehydratase (12), ,B-ketoacyl synthase (12), f3-ketoacyl reductase (13), ,B-hydroxyacyl enoyl reductase (12), and thioesterase (14). The f3-ketoacyl synthase activity was also determined by measuring the increase in absorbance at 280 nm due to formation of triacetic acid lactone (15).4'-Phosphopantetheine Content. To determine the 4'-phosphopantetheine content of FAS, we developed a simple and sensitive method based on spectrophotometric measurement of the phenylthiocarbamoyl (PTC) derivative of taurine released after performic acid oxidation and hydrolysis of the protein. PTC-taurine can be separated from other PTC-amino acids by using reverse-phase high-performance liquid chromatography (HPLC) and following the absorbance at 254 nm. In this system,...