SUMMARY
The accelerated-cell-death11 (acd11) mutant of Arabidopsis provides a genetic model for studying immune response activation and localized cellular suicide that halts pathogen spread during infection in plants. Here, we elucidate ACD11 structure/function and show that acd11 disruption dramatically alters the in vivo balance of sphingolipid mediators that regulate eukaryotic programmed cell death. In acd11 mutants, normally low ceramide-1-phosphate (C1P) levels become elevated, but the relatively abundant cell death inducer, phytoceramide, rises acutely. ACD11 exhibits selective intermembrane transfer of C1P and phyto-C1P. Crystal structures establish C1P binding via a surface-localized, phosphate headgroup recognition center connected to an interior hydrophobic pocket that adaptively ensheaths lipid chains via a cleft-like gating mechanism. Point mutation mapping confirms functional involvement of binding-site residues. A π-helix (π-bulge) near the lipid-binding cleft distinguishes apo-ACD11 from other GLTP-folds. The global two-layer, α-helically-dominated, ‘sandwich’ topology displaying C1P-selective binding identifies ACD11 as the plant prototype of a new GLTP-fold subfamily.