Denitrification is an important net sink for NO 3 -in streams, but direct measurements are limited and in situ controlling factors are not well known. We measured denitrification at multiple scales over a range of flow conditions and NO 3 -concentrations in streams draining agricultural land in the upper Mississippi River basin. Comparisons of reach-scale measurements (in-stream mass transport and tracer tests) with local-scale in situ measurements (pore-water profiles, benthic chambers) and laboratory data (sediment core microcosms) gave evidence for heterogeneity in factors affecting benthic denitrification both temporally (e.g., seasonal variation in NO 3 -concentrations and loads, flood-related disruption and re-growth of benthic communities and organic deposits) and spatially (e.g., local stream morphology and sediment characteristics). When expressed as vertical denitrification flux per unit area of streambed (U denit , in), results of different methods for a given set of conditions commonly were in agreement within a factor of 2-3. At approximately constant temperature (*20 ± 4°C) and with minimal benthic disturbance, our aggregated data indicated an overall positive relation between U denit (*0-4,000 lmol N m -2 h -1 ) and stream NO 3 -concentration (*20-1,100 lmol L -1 ) representing seasonal variation from spring high flow (high NO 3 -) to late summer low flow (low NO 3 -). The temporal dependence of U denit on NO 3-was less than first-order and could be described about equally well with power-law or saturation equations (e.g., for the unweighted dataset, -008-9282-8 in m day -1 ) at seasonal and possibly event time scales; (2) although k1 denit was relatively large at low flow (low NO 3 -), its impact on annual loads was relatively small because higher concentrations and loads at high flow were not fully compensated by increases in U denit ; and (3) although NO 3 -assimilation and denitrification were linked through production of organic reactants, rates of NO 3 -loss by these processes may have been partially decoupled by changes in flow and sediment transport. Whereas k1 denit and v f,denit are linked implicitly with stream depth, NO 3 -concentration, and(or) NO 3 -load, estimates of U denit may be related more directly to field factors (including NO 3 -concentration) affecting denitrification rates in benthic sediments. Regional regressions and simulations of benthic denitrification in stream networks might be improved by including a non-linear relation between U denit and stream NO 3 -concentration and accounting for temporal variation.