This study explores the potential of Gracilaria sp., a red seaweed species, as a source of protein ingredients. We investigated the effects of high voltage pulsed electric field (PEF) pre-treatment, followed by either water-mediated extraction or pH shift, on the total-solute (“dry matter”) and protein release, and the content of essential and branched-chain amino acids (BCAA) in the extracts. The PEF was administered using a custom-made generator within a specially designed electroporation cell with sliding electrodes. The treatment parameters comprised 1000 V, a 50 µs pulse duration, 200 pulses at a 3 Hz frequency, and an inter-electrode gap ranging from 3.9 to 4.4 mm. The pH shift extraction was executed through combination of fractions extracted sequentially at pH-shift steps spanning the pH range of 1 to 12. Both PEF and pH played pivotal roles in the fractionation of Gracilariasp., enhancing protein release compared to water-mediated extraction, PEF pre-treatment, or pH shift alone. The combination of PEF and sequential pH washes (pH 1 to 12) resulted in a total solute release of 9.61±0.04% and protein release of 28.02±0.2% with essential amino acid (EAA) content of 63.6±5.3%, and BCAA content of 3.47±0.06%. It is noteworthy that PEF significantly increased the EAA and BCAA content of the protein extracts, irrespective of pH shifts. These findings underscore the promising potential of PEF pre-treatment in producing functional food ingredients derived from macroalgal sources.