Abstract:The cystic fibrosis transmembrane conductance regulator (CFTR) chloride channel is activated by ATP binding-induced dimerization of nucleotidebinding domains, the interaction between the phosphorylated regulatory (R) domain and the curcumin-sensitive interface between intracellular loop (ICL) 1 and ICL4, and the resultant inward-to-'outward' reorientation of transmembrane domains. Although transmembrane helices (TM) 2 and TM11 link the ICL1-ICL4 interface with the interface between extracellular loop (ECL) 1 a… Show more
“…In contrast, if the ligand binding sites are not cooperative, the Hill coefficient should not change when the potency is altered. For example, a single engineered Zn 2+ site in cystic fibrosis transmembrane conductance regulator (CFTR) always keeps a constant Hill coefficient of a Zn 2+ dose response although the site-mutation at the metal site decreases the Zn 2+ potency [ 22 ].…”
Section: The Vanilloid Cooperativity Is Residue Site-dependentmentioning
Both a silent resident phosphatidylinositol lipid and a “hot” vanilloid agonist capsaicin or resiniferatoxin have been shown to share the same inter-subunit binding pocket between a voltage sensor like domain and a pore domain in TRPV1. However, how the vanilloid competes off the resident lipid for allosteric TRPV1 activation is unknown. Here, the
in sillico
research suggested that anchor-stereoselective sequential cooperativity between an initial recessive transient silent weak ligand binding site and a subsequent dominant steady-state strong ligand binding site in the vanilloid pocket may facilitate the lipid release for allosteric activation of TRPV1 by vanilloids or analogs upon non-covalent interactions. Thus, the resident lipid may play a critical role in allosteric activation of TRPV1 by vanilloid compounds and analogs.
“…In contrast, if the ligand binding sites are not cooperative, the Hill coefficient should not change when the potency is altered. For example, a single engineered Zn 2+ site in cystic fibrosis transmembrane conductance regulator (CFTR) always keeps a constant Hill coefficient of a Zn 2+ dose response although the site-mutation at the metal site decreases the Zn 2+ potency [ 22 ].…”
Section: The Vanilloid Cooperativity Is Residue Site-dependentmentioning
Both a silent resident phosphatidylinositol lipid and a “hot” vanilloid agonist capsaicin or resiniferatoxin have been shown to share the same inter-subunit binding pocket between a voltage sensor like domain and a pore domain in TRPV1. However, how the vanilloid competes off the resident lipid for allosteric TRPV1 activation is unknown. Here, the
in sillico
research suggested that anchor-stereoselective sequential cooperativity between an initial recessive transient silent weak ligand binding site and a subsequent dominant steady-state strong ligand binding site in the vanilloid pocket may facilitate the lipid release for allosteric activation of TRPV1 by vanilloids or analogs upon non-covalent interactions. Thus, the resident lipid may play a critical role in allosteric activation of TRPV1 by vanilloid compounds and analogs.
“…66 Furthermore, as menthol shares the same binding pocket with WS-12 but the Hill coefficient of a WS-12 dose response is 1, 39 there is no cooperativity between four menthol binding pockets in homotetrameric TRPM8 through inter-subunit communication, just like a single engineered Zn 2+ site in CFTR. 67…”
Section: Four Menthol Binding Pockets In Homotetrameric Trpm8 Are Independent and Have No Cooperativitymentioning
Both menthol and its analog WS-12 share the same hydrophobic intra-subunit binding pocket between a voltage-sensor-like domain and a TRP domain in a cold-sensing TRPM8 channel. However, unlike WS-12, menthol upregulates TRPM8 with a low efficacy but a high coefficient of a dose response at membrane hyperpolarization and with ligand stereoselectivity at membrane depolarization. The underlying mechanisms are unknown. Here, this in silico research suggested that the ligand-stereoselective sequential cooperativity between two menthol molecules in the WS-12 pocket is required for allosteric activation of TRPM8. Furthermore, two H-bonded homochiral menthol dimers with both head-to-head and head-to-tail can compete for the WS-12 site via non-covalent interactions. Although both dimers can form an H-bonding network with a voltage sensor S4 to disrupt a S3-S4 salt bridge in the voltage-sensor-like domain to release a "parking brake," only one dimer may drive channel opening by pushing a "gas pedal" in the TRP domain away from the S6 gate against S4. In this way, the efficacy is decreased, but the cooperativity is increased for the menthol effect at membrane hyperpolarization. Therefore, this review may extend a new pathway for ligand-stereoselective allosteric regulation of other voltage-and ligand-gated ion channels by menthol.
“…Previous studies demonstrated that these transition metal ions can bind to ion channels such as cystic fibrosis transmembrane conductance regulator (CFTR) and Slo BKCa and Kv4 channels, regulating channel gating. [29,[33][34][35][36][37][38][39] When the sandwiched transition metal cation interacts with M854 on S5, the additional swaping dynamic interaction between this metal site from one subunit and N958 on S6 from another adjacent subunit may facilitate the relative movement of the pore domain against the VSLD and the TRP domain in favor of opening of both upper and lower gates in the channel pore. Thus, the putative transition metal bridge of M854 on S5 with H835 on S4 and W789 on S3, together with the H-bond between R998 in the TRP domain and D772 or Q776 on S2, can prepare two smaller hairpins with 0 to 3-residue loops to stabilize the cold efficacy and to avoid cold denaturation (Figure 3).…”
The menthol sensor TRPM8 can be activated by cold and thus serves as a thermometer in a primary afferent sensory neuron for noxious cold detection. However, the underlying design principle is unknown. Here, a hairpin topological structural model and graph theory were prepared to test a role of the cold-dependent hairpin formation in the cold-evoked gating pathway of TRPM8. The results showed that the formation of a large lipid-dependent hairpin initiates a low temperature threshold in favor of TRPM8 activation. Furthermore, two smaller hairpins, which enhance the coupled interactions of the voltage-sensor-like domain with both the pore domain and the TRP domain, can stabilize the cold efficacy and work as a fuse to prevent cold denaturation. The cold-induced hairpin rearrangements along the gating pathway may be necessary for the high cold sensitivity. This hairpin model may provide a structural basis for activation of the thermo-gated TRP channels at low temperature.
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