The Iroquois homeobox (Irx) genes have been implicated in the specification and patterning of several organs in Drosophila and several vertebrate species. Misexpression studies of chick, Xenopus, and zebra fish embryos have demonstrated that Irx genes are involved in the specification of the midbrain-hindbrain boundary. All six murine Irx genes are expressed in the developing heart, suggesting that they might possess distinct functions during heart development, and a role for Irx4 in normal heart development has been recently demonstrated by gene-targeting experiments. Here we describe the generation and phenotypic analysis of an Irx2-deficient mouse strain. By targeted insertion of a lacZ reporter gene into the Irx2 locus, we show that lacZ expression reproduces most of the endogenous Irx2 expression pattern. Despite the dynamic expression of Irx2 in the developing heart, nervous system, and other organs, Irx2-deficient mice are viable, are fertile, and appear to be normal. Although chick Irx2 has been implicated in the development of the midbrain-hindbrain region, we show that Irx2-deficient mice develop a normal midbrain-hindbrain boundary. Furthermore, Irx2-deficient mice have normal cardiac morphology and function. Functional compensation by other Irx genes might account for the absence of a phenotype in Irx2-deficient mice. Further studies of mutant mice of other Irx genes as well as compound mutant mice will be necessary to uncover the functional roles of these evolutionarily conserved transcriptional regulators in development and disease.The Drosophila Iroquois complex (Iro-C) was first identified as prepattern genes that control the patterning of notum bristles (see reference 15 for a review). Iro-C contains three highly related homeobox genes (araucan [ara], caupolican [caup], and mirror [mir]), which encode transcriptional regulators that control the expression of the proneural genes, such as achaete and scute. These Iroquois homeobox (Irx) genes also play regulatory roles in the development of other structures, including the head, eye, and wing veins.The structure and organization of vertebrate Irx genes are evolutionarily conserved (15). For example, in mouse and human, six Irx genes (Irx1 to Irx6) are found in two clusters; Iro-A contains Irx1, Irx2, and Irx4, Irx5, and Irx6 (26). Similar to their Drosophila counterparts, the vertebrate Irx genes also possess regulatory functions in the specification and patterning of early embryos and several organs. Misexpression studies have revealed the roles of three Xenopus Irx genes (Xiro1, -2, and -3) in the regulation of vertebrate proneural genes and the specification of the neural plate (3, 16). After the neural plate is specified, the Irx genes are also involved in the anteroposterior and dorsoventral patterning of the neural tube. In chicken embryos, Irx3 is implicated in determining the positioning of zona limitans intrathalamica at the border between the diencephalon and telencephalon (21) as well as in the dorsoventral patterning of the spinal cord...