The Basidiomycete fungus Moniliophthora perniciosa is the causal agent of the disease known as "witch's broom disease", which affects cacao tree (Theobroma cacao) and is one of the main detractors of the productivity of this crop in Brazil and worldwide. The damage to cacao trees resulting from infection by this plant pathogen includes fruit rot and induction of lateral shoots in the infected branches, resulting in general weakening of the plants. Control methods of this disease, such as genetic resistance, phytosanitary pruning and chemical control have been shown to be palliative measures. Given the peculiarities of this pathosystem, one of the envisioned alternatives is the development of biologically active compounds on essential metabolic pathways capable of reducing the damage caused by the disease. In the biotrophic phase of M. perniciosa, it has been found that the alternative electron transfer pathway played by the enzyme alternative mitochondrial oxidase (AOX) is important for ATP production and fungicide tolerance. Recently, it was shown that in vitro and in vivo inhibiton of this enzyme reduced the viability of M. perniciosa spores. In this work, a new in vivo approach is purposed for the evaluation of AOX synthetic inhibitor to assess its efficacy against M. perniciosa in the tomato model 'Micro-Tom' (MT), sourced by roots via nutrient solution. On the other hand, understanding the mechanisms of phytopathogenic fungi infection paves the way for new control strategies. Recent reports in other pathosystems suggest that, in addition to effector proteins, pathogens employ small RNAs (sRNA) for direct manipulation of the plant defense system. Hosts expressing double-stranded RNA corresponding to target genes of the pathogen, including filamentous fungi, have been shown to generate small interfering RNAs (siRNA) that lead to the silencing of these target genes, in an approach named Host Induced Gene Silencing (HIGS). This project aimed to confirm the presence of genetic machinery for the production and processing of small RNAs (sRNA) and the RNA interference mechanism in the M. perniciosa genome. In addition, the 'Micro-Tom' (MT) model tomato was genetically transformed to express one of the key components of this mechanism (Dicers enzymes) to understand its role in the pathogenicity of M. perniciosa in future studies. As a result, alternative oxidase inhibitor (AOX) '7j-41' preventively administered to inoculation of M. perniciosa basidiospores was effective in reducing the severity of infection and protecting plant biomass from the deleterious effects of the pathogen. M. perniciosa has in its genome genes participating in the canonical gene silencing pathway described in fungi, including three Dicers (DCL), 10 Argonauts (AGO), and seven RNA-dependent RNA polymerase (RdRPs). These genes were mainly expressed in the monocariotic, dicariotic, primordial and basidioma mycelium phases, suggesting importance in several stages of plant-pathogen interaction. Transgenic 'Micro-Tom' tomato plants have been success...