“…Splicing is an essential process that allows removal of intronic sequences from mRNA precursors (pre-mRNA)+ Introns are defined by short conserved sequences (GU at the 59 and AG at 39 end of the major class of introns) and more degenerate adjacent consensus sequences (reviewed by Burge et al+, 1999)+ The 39 splice site AG, for example, is preceded by a pyrimidine-rich stretch (Py-tract) and a branch point sequence further upstream+ Recognition of these sequences triggers the assembly of a large macromolecular complex-the spliceosome-composed of five small nuclear ribonucleoprotein (snRNP) particles and 50 to 100 non-snRNP polypeptides, that is responsible for the biochemical reactions leading to intron removal (reviewed by Krämer, 1996;Kambach et al+, 1999)+ Spliceosome assembly involves several distinct steps, at least in vitro (reviewed by Reed, 2000)+ The earliest steps include, in higher eukaryotes, interactions between U1 snRNP and the 59 splice site, of the U2 auxiliary factor (U2AF) 65-and 35-kDa subunits with the Py-tract and 39 ss AG, respectively, and of SF1/ mammalian branchpoint binding protein (mBBP) with the branchpoint (Zhuang & Weiner, 1986;Zamore et al+, 1992;Berglund et al+, 1997;Merendino et al+, 1999;Wu et al+, 1999;Zorio & Blumenthal, 1999)+ Other factors influence formation of this complex in a substratespecific manner+ The early (E) complex commits premRNAs to be spliced and is ATP independent+ E complex precedes formation of the ATP-dependent prespliceosomal complex (also known as complex A), that contains U2 snRNP stably associated with the branchpoint and surrounding sequences+ Incorporation of the U4/5/6 tri-snRNP results in fully assembled spliceosomes that can exist in two conformations (complexes B and C), of which complex C is the catalytically active form (reviewed by Staley & Guthrie, 1998)+ Intronic sequences can sometimes be retained in a regulated fashion in particular mRNAs+ For instance, several families of RNA and DNA viruses transcribe intronic sequences that in the course of the viral infection can be removed or retained, giving rise to distinct mRNAs with different coding capacities (Fields, 1996)+ Regulated intron retention also occurs in cellular genes+ One example is the Drosophila gene malespecific-lethal-2 (msl-2), which is involved in the control of X chromosome dosage compensation+ Dosage compensation in Drosophila occurs by hypertranscription in males of the single X chromosome (reviewed by Bashaw & Baker, 1996)+ This is achieved through the assembly on the X chromosome of a chromatin remodeling complex (MSL complex) that contains the protein MSL-2+ MSL-2 expression is inhibited in females, thus preventing MSL complex assembly and function+ Inhibition of msl-2 expression is related to retention of an intron present at the 59 untranslated sequence (UTR) of msl-2 transcripts in female flies (Bashaw & Baker, 1995;Kelley et al+, 1995;…”