BACKGROUND.The doubleāstrand break (DSB) repair capacity has been implicated in the survival of patients in several cancer types. However, little is known about the prognostic importance of the key DSB repair genesāataxiaātelangiectasia mutated (ATM), DNAādependent protein kinase catalytic subunit (DNAāPKcs), and the Ku heterodimeric regulatory complex 86ākD subunit (Ku80)āin nonsmall cell lung cancer (NSCLC). To address this issue, the authors determined the messenger RNA (mRNA) expression of these genes in patients NSCLC and assessed their prognostic relevance.METHODS.mRNA expression levels of ATM, DNAāPKcs, and Ku80 were measured in tumor and adjacent normal tissues from 140 patients with NSCLC by using quantitative realātime polymerase chain reaction analysis. Then, a Cox proportional hazards regression model and KaplanāMeier plots were used to evaluate the association between the tumor:normal (T/N) expression ratios of the 3 genes and the overall survival rate and duration in patients with NSCLC.RESULTS.mRNA expression of ATM and DNAāPKcs, but not of Ku80, was significantly higher in tumor tissues than in adjacent normal tissues (P = .003 and P < .001, respectively). The high T/N expression ratios of ATM and DNAāPKcs were associated significantly with a 1.82āfold increased risk of death (95% confidence interval, 1.05ā2.70) and a 2.13āfold increased risk of death (95% confidence interval, 1.21ā3.76), respectively. However, no significant association with risk was observed for Ku80. KaplanāMeier analyses revealed that patients with high T/N expression ratios of ATM or DNAāPKcs had notably shorter median survival than patients with low ratios.CONCLUSIONS.The current findings suggested that the T/N expression ratios of ATM and DNAāPKcs may be useful for identifying NSCLC patients with a poor prognosis who may benefit from more aggressive therapy. Cancer 2008. Ā©2008 American Cancer Society.