The Wilms tumor suppressor WT1 has transcriptionactivating and -suppressing capabilities. WT1-responsive promoters have been described; however, in large part, it remains unclear which potential downstream genes are physiologically relevant and mediate the function of WT1 in tumorigenesis and development. To identify genes regulated by WT1 in vivo, we used a dominantnegative version of WT1 to modulate WT1 activity in a Wilms tumor cell line. Screening oligonucleotide arrays with RNA from these cells uncovered a number of genes whose expression was altered by abrogation of WT1 function. Several of the genes encode members of the CCN family of growth regulators. The promoter of one of these genes, connective tissue growth factor (CTGF), is suppressed by WT1 both in its endogenous location and in reporter constructs. WT1 regulation of CTGF expression is not mediated by previously identified WT1 recognition elements and may therefore involve a novel mechanism. Our results indicate that CTGF is a bona fide target of WT1 transcriptional suppression and likely plays a role in Wilms tumorigenesis and associated disease syndromes.Wilms tumor (pediatric nephroblastoma) is one of the most common solid tumors found in children. A subset (5-10%) of Wilms tumors is caused by mutations in the tumor suppressor gene, WT1 (reviewed in Refs. 1 and 2). In addition to its role in tumorigenesis, WT1 is also required for normal kidney and urogenital development. WT1 is expressed in a temporally and spatially restricted pattern in the developing kidney and urogenital structures, and WT1 knockout mice die before birth with both kidney and urogenital development blocked at an early stage (3). Based upon these findings, it has been suggested that WT1 is required for the expression of signaling molecules and receptors involved in the reciprocal inductive events of early kidney differentiation (reviewed in Ref. Although it is clear that WT1 plays an important role in both development and tumorigenesis, the mechanisms through which it functions in these processes remain poorly understood. WT1 has been implicated in such diverse pathways as RNA splicing, DNA replication, and apoptosis (reviewed in Refs. 2 and 4). The most well characterized function of WT1, however, is that of a transcription factor. The amino terminus of WT1 is rich in proline and glutamine, a feature characteristic of transactivation domains, and the carboxyl terminus contains four C2H2 zinc finger DNA-binding motifs and a nuclear localization signal sequence. In vivo, there are four major isoforms of WT1 generated by alternative splicing at two sites. Splicing of exon 5 removes 17 amino acids from the middle of the protein, and a second alternative splicing event removes three amino acids (KTS) from between the third and fourth zinc fingers of the protein. The four isoforms of WT1 are present in a constant ratio that is conserved among species, suggesting that they have non-overlapping functions.WT1 binds to DNA via its zinc finger motifs, but this binding is isoform-depen...