Cyclic terpenes and terpenoids are found throughout nature. They comprise an especially important class of compounds from plants that mediate plantenvironment interactions, and they serve as pharmaceutical agents with antimicrobial and anti-tumor activities. Molecular comparisons of several terpene cyclases, the key enzymes The biosynthesis of cyclic terpenes is determined by key branch point enzymes referred to as terpene cyclases, or more properly, terpene synthases. The reactions catalyzed by terpene cyclases are complex, intramolecular cyclizations that may involve several partial reactions (8, 9). For example, the bioorganic rationale for the cyclization of farnesyl diphosphate by two sesquiterpene cyclases pertinent to this work are illustrated in Fig. LA. In step 1, the initial ionization of farnesyl diphosphate is followed by an intramolecular electrophilic attack between the carbon bearing the diphosphate moiety and the distal double bond to form germacrene A, a macrocyclic intermediate. Internal ring closure and formation of the eudesmane carbonium ion constitutes step 2. For tobacco 5-epi-aristolochene synthase (TEAS), the terminal step is a hydride shift, methyl migration, and deprotonation at C9, giving rise to 5-epi-aristolochene (step 3a). Hyoscyamus muticus vetispiradiene synthase (HVS) shares common mechanisms at steps 1 and 2, but differs from TEAS in the third partial reaction, in which a ring contraction would occur due to alternative migration of an electron pair. In each case, a monomeric protein of -64 kDa catalyzes the complete set of partial reactions and requires no cofactors other than Mg2+.Numerous terpene cyclases from plant and microbial sources have been partially or completely purified and characterized (11-22). These enzymes behave as soluble enzymes with molecular weights of 40,000-100,000. Mechanistic studies have included evaluations of the proposed reaction mechanisms (23-27), efficacy of substrate analogs (28, 29) and suicide inhibitors (28)(29)(30), and the use of chemical-modifying reagents and site-directed mutagenesis to identify amino acids essential for catalysis (31)(32)(33). Recently, a number of fungal and plant genes for monoterpene, sesquiterpene, and diterpene cyclases have been described (34-41). The plant monoterpene, sesquiterpene, and diterpene cyclases exhibit a significant degree of similarity at the amino acid level, and at least for the sesquiterpene and diterpene cyclases, the intron/exon organization of genomic DNA is nearly identical (40-42). In contrast, other than perhaps the conservation of a 5-aa sequence rich in aspartate residues, very little similarity is observed between the fungal and plant sesquiterpene cyclase proteins (38).One implication of the sequence similarity and conserved intron/exon organization observed between the plant genes is that regions of sequence conservation may correspond to functional domains, and those functional domains may mediate the catalysis of particular partial reactions. This inference was recently teste...