2022
DOI: 10.1155/2022/7776403
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Exploring the Protective Effect and Mechanism of Buddlejae Flos on Sodium Selenite-Induced Cataract in Rats by Network Pharmacology, Molecular Docking, and Experimental Validation

Abstract: Objective. Buddlejae Flos has a long history of utilization by humans to treat ophthalmic diseases. Although in vitro study revealed that it can be used for treating cataract, the bioactive components and the mechanism of efficacy remained unclear. This study aims to discover the bioactive components and mode of efficacy of Buddlejae Flos in cataract treatment. Methods. Several databases were screened for bioactive components and corresponding targets, as well as cataract-related targets. Using the String data… Show more

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Cited by 4 publications
(4 citation statements)
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“…The MD-2 protein structure was processed by Schrodinger software and finally saved as a receptor. Finally, using default software parameters, DMB was docked with the MD-2 protein by flexible docking ( 21 ).…”
Section: Methodsmentioning
confidence: 99%
“…The MD-2 protein structure was processed by Schrodinger software and finally saved as a receptor. Finally, using default software parameters, DMB was docked with the MD-2 protein by flexible docking ( 21 ).…”
Section: Methodsmentioning
confidence: 99%
“…Shared targets by drug and disease were performed by a PPI analysis by String database ( https://string-db.org/ ). Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis and gene ontology biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF) were carried out using the Database of Metascape ( https://metascape.org/) 50 . The p-value is calculated by the hypergeometric test as the probability of obtaining overlapping genes of certain pathway members, forming a cumulative hypergeometric distribution.…”
Section: Methodsmentioning
confidence: 99%
“…To better demonstrate the binding ability of the drug and the target, the active in gredients and vital targets were screened from the above steps for molecular docking verification. First, the crystal structure of the core target (receptor) was downloaded from the PDB database [11,12], and the structural formula of the active ingredient of the small molecule (ligand) were downloaded from the TCMSP database. Next, molecular docking experiments were performed by importing into "Schrödinger Maestro" software [13].…”
Section: Molecular Docking Of Active Ingredients and Vital Targetsmentioning
confidence: 99%