Abstract:Crop wild relatives (CWRs) are recognized as the best potential source of traits for crop improvement. However, successful crop improvement using CWR relies on identifying variation in genes controlling desired traits in plant germplasms and subsequently incorporating them into cultivars. Epigenetic diversity may provide an additional layer of variation within CWR and can contribute novel epialleles for key traits for crop improvement. There is emerging evidence that epigenetic variants of functional and/or ag… Show more
“…Advances in the knowledge of epigenetic regulation in the plant multiple generation stress memory have provided new procedures and approaches for breeding crops and sustainable germplasm banks for future climate challenges [112,113]. Plant stress memory is described under two categories: mitotic stress memory, or somatic memory, and meiotic stress memory, or transgenerational memory [114][115][116]. Plant stress memory associated with the inheritance of SAR is likely to be epigenetic [117,118].…”
Soil fungi of the phylum Glomeromycota and plants form arbuscular mycorrhizal (AM) symbiosis. The AM fungi, during the symbiosis, establish a sink for plant photosynthate by utilizing it for biomass and metabolic energy, while the AM plants obtain nutrients and water through the AMF hyphae. The benefits of AM symbiosis on plant fitness include better mineral nutrition, especially those that are immobile in soil solution (e.g., phosphorus, copper, and zinc), and higher tolerance of mycorrhizal plants to abiotic stresses, such as drought, salinity, high soil temperature, presence of heavy metals, and others abiotic factors. Recent studies have revealed that AMF can suppress pests and plant diseases by the activation of defense regulatory genes. The knowledge of the mechanisms behind the induction of resistance by mycorrhizal symbiosis (mycorrhizal-induced resistance [MIR]) remains unknown. This chapter describes the current advanced status of the role of MIR in plant disease protection.
“…Advances in the knowledge of epigenetic regulation in the plant multiple generation stress memory have provided new procedures and approaches for breeding crops and sustainable germplasm banks for future climate challenges [112,113]. Plant stress memory is described under two categories: mitotic stress memory, or somatic memory, and meiotic stress memory, or transgenerational memory [114][115][116]. Plant stress memory associated with the inheritance of SAR is likely to be epigenetic [117,118].…”
Soil fungi of the phylum Glomeromycota and plants form arbuscular mycorrhizal (AM) symbiosis. The AM fungi, during the symbiosis, establish a sink for plant photosynthate by utilizing it for biomass and metabolic energy, while the AM plants obtain nutrients and water through the AMF hyphae. The benefits of AM symbiosis on plant fitness include better mineral nutrition, especially those that are immobile in soil solution (e.g., phosphorus, copper, and zinc), and higher tolerance of mycorrhizal plants to abiotic stresses, such as drought, salinity, high soil temperature, presence of heavy metals, and others abiotic factors. Recent studies have revealed that AMF can suppress pests and plant diseases by the activation of defense regulatory genes. The knowledge of the mechanisms behind the induction of resistance by mycorrhizal symbiosis (mycorrhizal-induced resistance [MIR]) remains unknown. This chapter describes the current advanced status of the role of MIR in plant disease protection.
“…In recent decades, emerging epigenetic processes have been highlighted as promising mechanisms to facilitate the generation of the first tier of rapid phenotypic diversity required to improve the fitness and adaptive responses in the natural populations of plants ( Bräutigam et al, 2013 ; Amaral et al, 2020 ; Ashe et al, 2021 ). A survey of published literature shows that a large number of research investigations wherein the epigenetic route has been shown to deploy rapid phenotypic plasticity for adaptation and evolution have come from studies in model plant and crop species ( Ding et al, 2018 ; Guarino et al, 2022 ; Varotto et al, 2022 ) which is primarily due to the availability of large genomic resources accumulated in this group of plants. The advancement in sequencing technologies and their cost effectiveness, has lately facilitated the availability of genomic resources in natural populations of non-model species as well.…”
Recent research in plant epigenetics has increased our understanding of how epigenetic variability can contribute to adaptive phenotypic plasticity in natural populations. Studies show that environmental changes induce epigenetic switches either independently or in complementation with the genetic variation. Although most of the induced epigenetic variability gets reset between generations and is short-lived, some variation becomes transgenerational and results in heritable phenotypic traits. The short-term epigenetic responses provide the first tier of transient plasticity required for local adaptations while transgenerational epigenetic changes contribute to stress memory and help the plants respond better to recurring or long-term stresses. These transgenerational epigenetic variations translate into an additional tier of diversity which results in stable epialleles. In recent years, studies have been conducted on epigenetic variation in natural populations related to various biological processes, ecological factors, communities, and habitats. With the advent of advanced NGS-based technologies, epigenetic studies targeting plants in diverse environments have increased manifold to enhance our understanding of epigenetic responses to environmental stimuli in facilitating plant fitness. Taking all points together in a frame, the present review is a compilation of present-day knowledge and understanding of the role of epigenetics and its fitness benefits in diverse ecological systems in natural populations.
“…The epialleles, also known as epigenetic alleles, are the loci having epigenetic modifications that may arise naturally or be induced artificially and are transferred stably to the next generation ( Taudt et al, 2016 ). In addition to natural genetic variation, which contributes to phenotypic diversity, epialleles impart an additional source of heritable variation ( Varotto et al, 2022 ; Figure 2 ). There are two ways in which epialleles could be formed: non-genetic (also known as epigenetic) and genetic ( Taudt et al, 2016 ).…”
Section: Plant Epibreedingmentioning
confidence: 99%
“…Furthermore, genetic epialleles arise due to the insertion of a transposon in an intergenic region, leading to its inactivation primarily by methylation of DNA ( Pecinka et al, 2013 ). The methylated DNA enhances methylation on all sides of the insertion site, leading to the formation of new epialleles ( Varotto et al, 2022 ). It has been documented in Arabidopsis, rice and maize ( Banks et al, 1988 ; Schmitz et al, 2013 ; Zhang et al, 2015 ).…”
Climate-resilient crops with improved adaptation to the changing climate are urgently needed to feed the growing population. Hence, developing high-yielding crop varieties with better agronomic traits is one of the most critical issues in agricultural research. These are vital to enhancing yield as well as resistance to harsh conditions, both of which help farmers over time. The majority of agronomic traits are quantitative and are subject to intricate genetic control, thereby obstructing crop improvement. Plant epibreeding is the utilisation of epigenetic variation for crop development, and has a wide range of applications in the field of crop improvement. Epigenetics refers to changes in gene expression that are heritable and induced by methylation of DNA, post-translational modifications of histones or RNA interference rather than an alteration in the underlying sequence of DNA. The epigenetic modifications influence gene expression by changing the state of chromatin, which underpins plant growth and dictates phenotypic responsiveness for extrinsic and intrinsic inputs. Epigenetic modifications, in addition to DNA sequence variation, improve breeding by giving useful markers. Also, it takes epigenome diversity into account to predict plant performance and increase crop production. In this review, emphasis has been given for summarising the role of epigenetic changes in epibreeding for crop improvement.
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