To quantify relative digestion rates of zooplankton prey, we removed alimentary tracts of vendace Coregonus albula and whitefish Coregonus lavaretus larvae, cut them into four equal quarters, and analyzed them separately. Hard-bodied zooplankton taxa (e.g., Bosmina sp. and Daphnia sp.) were distributed fairly evenly across these four quarters, whereas soft-bodied taxa (e.g., Synchaeta sp. and Polyarthra sp.) were concentrated in the first quarter. Thus, zooplanktonic prey digest at different rates. We then ranked prey according to their resistance to digestion, deriving prey-specific coefficients to eliminate the bias associated with entire gut analysis. For Synchaeta sp. to be comparable to Bosmina sp., their numbers had to be multiplied by 7.3. Similar patterns of food degradation likely exist among other fishes that are feeding on a mixed diet of soft-and hard-bodied zooplankton. To eliminate bias, we suggest that investigators analyze only foregut contents.